RNA id: XM_036939467.1


Basic Information

Item Value
RNA id XM_036939467.1
length 2806
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110514497
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98766105 ~ 98906443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataagGACAGGCTTACTCCAGAGCACTGTGTCTCTGTGGTTAATCATTGTACCTACTTGGTGCTGGGGGACAGAAAGTGCTTTAAGTAGGGTAGTATGTTGTAAAATTAGACAGAGCCACTTGTCCACAATACATGATAAATGGACAAGTGCCTTTCCTGTTTGTTTCCATGCAATTGTTATGTGTGTGTCGGTTTGATTATACAACAAGTGGGTTGTtcaatagagtgtgtgtgtgtgtgtgtgtgtgtgaatgcctgcatgcgtgtgtttgtgcctgtgtgcgtgtctTCAGAGCGCAGCGAGACTTCGTATAGCAGTGACGTTTCTCTAGCCTCAAGCCGTGGCTAGGTAGAGTGGTCCCCTGGTAAAGCCCTCCTATGAGGTGAGGTTAAGGTGACCCCTGACCCCGCTCACACAGCGCCCCTCCACCAGGCAGCAGGACTAAGGGATGTCACGGGGCTTCCTGCTGCTCACACTGCTCACAGTCTTCTCCAGCATCCAAGTGTCCCCAGCTAAGCCATTAAAGGCGTTGATGCAGAGATGGGTGATGTACACGGAGGAGTGTAGCCGCAATCACAGCAGAGAACCGCCGCTCACTGGTGTTGTGTGTAACAGGACCTTTGACATGTATGCCTGCTGGCCCGATGGACTCGCCAACACTACCGTCAGTGTGTCCTGTCCCTGGTACCTGCCCTGGCACCACAAAGtCCAGCATGGTTCGGTGTACAGGGAGTGTGACGCGGACGGCCAGTGGGTTCCCCAGAAGAACACGAGCGAGTGTGATGCTAATGATCCTGCTCAGcctCACTATGGTCAGATCCTCAAGAAGTTCCGGACCATGTACACCGTGggctactctctgtctctgggggCTCTGGTGTTAGCGCTCGGAATCCTGATCACtttcagGAAGCTCCACTGTATGAGGAACAACATCCACATGAACCTGTTTGCATCCTTCATCCTGCGTGCTCTGTCCATCCTGATAAAGGACGCCATGTTGGAGGCTCCCAGCGTCAACATCGGACAGGACCAGGAAGTTACAGACTATGAGGTGGAGTGGCTCGTCAACAAcgagACAGCGGTGGGGTGTCGTATCGCCGTGGTGATGATGCAGTACAGTATCATGGCTAACAGCTATTGGCTGCTGGTGGAAGGGATCTACCTCCACAACCTGCTGGTCATCACCGTGTTCACTGAGAGAAACTACTTCAACATCTACCTGTGTATCGgctgggGTGCCCCTCTGATCTTCCTGGTGCCCTGGGTGATGGTGAAATACCTGTATGAAAATGAGGAGTGCTGGGAGCAGAATATCAACATGCAGTACTGGTGGATCATACGGTCACCTATACTGCTAGCAGTTGTGATTAACTTCCTGATCTTCATCCACATAATAAAGATCCTGGTGTCCAAACTGAGGGCTCACCAGATGAGATACTCCGACTACAAGTTCCGgttGGCTAAGTCTACCCTAACCCTGATCCCTCTACTAGGGATACACTTGGTGGTGTTTGTCTTCGTGACGGATGAGTCCACCAAGGCCACCATCACCCTGCGTCTCACCAAACTCTTCATCGACCTCTTCTTCACCTCCTtccagGGTCTTCTGGTAGCTATCTTATACTGCTTTGTCAACAAAGAGGTCCAGTCAGAGATCCTGAAGAAGTGGAAGCGTTGGAAGCTGGGTCGTAACATCGAGGAGGAGTACCGCCACACCTATAGCCAGACGCCCCACCTCAACACTAAGAGCAGCAGCCTGCTGGGTCACGAGCACGCTCACGGGGGTCACGACCCCTCGCACCCCTCCTCAATgctcctccacccccacctccccGACATCACCACCTCCTCCCCTGCTCCCCCTGGCCAGGGCCCAGGCTGCTCCCCAGAGGAGAAGCACCTCCTGGTGGTGAGCTGTCAGAATGGCATGGGGCGGAGCAGGAAGAACACAGGGTCGAACATGCAGTTTCCCTCCCTACCACGTGAGGGCACCATCAGCTGTAGTCACACACTGATAGAGGATCATATGGATGAAATCTGCTTGACGGACAGGGTGTCAGAGTGTTACGAGGCTCCTAGAGGAAATGCAGAGAGCCACCTCTGAGACTGGAGAGGATGGGGAAGATTAATAACGTAACACCCTggtaactacagcagagactgGAGAGGACGGGGAAGATTAATGACGTAACACCCTggtaactacagcagagactgGAGAGGACGGGGAAGATTAATGACGTAACACCCTggtaactacagcagagactgGAGAGGACGGGGAAGATTAATGACGTAACACCCTggtaactacagcagagactgGAGAGGACGGGGAAGATTAATGACGTAACACCCTggtaactacagcagagactgGAGAGGACGGGGAAGATTAATGACGTAACACCCTggtaactacagcagagactgGAGAGGACGGGGAAGATTAATGACGTAACACCCTGGTAACACTCTGGAGCTGGGCAGTGTGTTTCAGGAGAGGTGTGTTTCTCAATGGCCGTCACCCTGGACCTATGTTAATGAGCGAGATGGCCTTGACAGACCCAGGACAAGTGTGTGTCTCAATGTTCGTATCGTCACCCTGAAACAGTgttagtggtagagagagacacCTACTCGACCCTCTCCAATCCACAGCCAAATGagagaaacatagaacaagcTAGACCTACCATGTTGGACCCCACTGACCCAGACCAGCCCTCCCATGTTGGACCCCTCTGACCCAGACCAGCCCTCCCATGTTGGACCCCTCTGACCCAGACCAGCCCTCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288729 lncRNA downstream 4423 98761260 ~ 98761682 (-) True G1132218
TU1288739 lncRNA downstream 8708 98756503 ~ 98757397 (-) True G1132225
TU1288769 lncRNA downstream 27238 98735669 ~ 98738867 (-) True G1132244
TU1288755 lncRNA downstream 62062 98701939 ~ 98704043 (-) False G1132236
TU1288779 lncRNA upstream 3353 98810361 ~ 98812860 (-) False G1132249
TU1288776 lncRNA upstream 3950 98810958 ~ 98812860 (-) True G1132249
TU1288805 lncRNA upstream 15691 98822699 ~ 98823015 (-) True G1132269
TU1288806 lncRNA upstream 16021 98823029 ~ 98824205 (-) True G1132270
TU1288808 lncRNA upstream 17730 98824738 ~ 98829253 (-) True G1132272
XM_036939567.1 mRNA downstream 194591 98566396 ~ 98571514 (-) True LOC110487126
XM_036939452.1 mRNA downstream 385193 98333131 ~ 98380912 (-) True LOC110485331
XM_036939453.1 mRNA downstream 403859 98333131 ~ 98362246 (-) False LOC110485331
XM_036939456.1 mRNA downstream 410647 98333131 ~ 98355458 (-) False LOC110485331
XM_036939454.1 mRNA downstream 410896 98333131 ~ 98355209 (-) False LOC110485331
XM_036939568.1 mRNA upstream 174753 98981761 ~ 99019633 (-) False LOC110539185
XM_021625816.2 mRNA upstream 214950 99021958 ~ 99025388 (-) False LOC110538838
XM_036939468.1 mRNA upstream 221160 99028168 ~ 99036661 (-) False btr02
XM_036939469.1 mRNA upstream 221160 99028168 ~ 99036662 (-) False btr02
XM_036939470.1 mRNA upstream 221160 99028168 ~ 99036662 (-) False btr02
TU1288236 other downstream 382290 98382970 ~ 98383815 (-) True G1131863
TU1288159 other downstream 506418 98258882 ~ 98259687 (-) True LOC118936513
TU1287948 other downstream 791385 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 905587 97857599 ~ 97860518 (-) True G1131666
TU1288015 other downstream 912512 97852786 ~ 97853593 (-) True G1131720
TU1288904 other upstream 199619 99006627 ~ 99010112 (-) True G1132328
TU1288947 other upstream 246496 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 284708 99091716 ~ 99092238 (-) True LOC110538840
TU1289204 other upstream 358940 99165948 ~ 99166607 (-) True G1132564
TU1289215 other upstream 366657 99173665 ~ 99175908 (-) False G1132569

Expression Profile