RNA id: XM_021625816.2


Basic Information

Item Value
RNA id XM_021625816.2
length 1611
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC110538838
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99021958 ~ 99027957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacaagcGTATGCTTCTACCCACTGCCACACAGACTTGCGCTAGCTGGCATCTCAGAGGGCAGCCCTCTCtccagtcctgtcctgtcctgggtGTTGAAGCTAGCTGGATGTTGAAGCTCTTCACCCCCTCTGCAGAAGCCAACCTGACCTCTCAGGTCCTCGTTCGTACCTGTGGACTGAGCTGAACCTTCCAaggcctctgtctctgcctccccctgaaccagccaACCCGGTTACCTACATCCACCTCTGACCTATACAACCACAGCTCCACAGGACTGCTGAAGAACACGTTGCTTCTCCAACGACTgcttggaagaggagaggagattcaTCACACTCCATCTGAGGACGTTTGGCCTCGTCTGTCCCCAGTTGGTCTCCGCATCaaccagagagaaggagagggtcaagaagaagaggaggaggaagacatcTGTTTTTCAAGATTTCGGGGGTGCATAGACTTTCCACGGCTTGGGACTATTTTAGTGAGACAAAGAGAAAGGACTTTAACATCCCAGTAACAACCAACGTGGTACAAATACTTACGAAAATCCAGCCAAATACCGGTAGACATCGTCAACCGTCACCACAACCGTTACTActgccacaacaacaacagcctgaCACCTTAACCATGGCGACCACCGGCATGCAGCTCCTGGGCCTGATCTTGTCTCTGGTTGGCTGGGTGGGCGGCTTCCTGGTATGCTCTGTTCCGCTGTGGCGCGTCACCGCCTTCATCGGCAACAACATCGTGACGGCTCAGATCATCTGGGAGGGGCTGTGGATGACCTGCATCGTCCAATCAACGGGCCAGATCCAGTGCAAGGTGTACGACAGTCTCTTGGCCCTGCCCAGCGACATGCAGGCGGCCCGGGGCCTCACCGTGCTCTCCGTCCTCCTCTGTGGCCTGGCCCTGGCTCTAGGTGTGGTGGGGGTAAAGTGCACCAAGTGTATTGGTCAGAATAGTCTGAAGGCTCGTATTGCAAGGATCTCCGGCTTTCTGTTCGGCATCGCTGGGTTTCTCTACCTGGTTCCTATCTGCTGGACGGCCCACTCCATTATCAGGGACTTCTATGATCCCCACGTGGCCGCGCCGCACAAGAGAGAGCTAGGCCCCGCCCTATACCTAGGCTGGGGGGCGTCGGCCTTGCTCCTGATTGGTGGGTCGCTGCTGTATGCGGGGTCGAGTCCTCCCGGCATCCCCGGGTCTCCGACCTTCAGCAGCGACAGCAGCCCCCGTAGAGGACCTGCTGCTCAGGTCAAAGGTTATGTCTGATCGGAATGCCACAAAACCCCATGATTCCATGATTCCGAGATTCTATGATTCCATGATTCCGCCCTGACAACATGAAAAACCCTCCTCTCTTAGTATTTATACTTTTTAATACTTTGGAAtgttaatgttattattattattcggtGGTGCTTTTTGTCATTCTTTCAAAAGATGCAATAGGAGGTTATGAAGGGAATTGTGAAATCATTTTGCTATTTCATGTGTCCCTGTTGTCCTCCGATAACCCTattgtctgtcagtctgtctgtctgtcagtgtaaaACCCAATAAAATCATCAGCCTTTCATTTCCTCTCTGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288860 lncRNA downstream 1649 98979666 ~ 99020309 (-) True G1132303
TU1288887 lncRNA downstream 2385 99017082 ~ 99019573 (-) True LOC110539185
TU1288908 lncRNA downstream 9042 99011586 ~ 99012916 (-) True G1132330
TU1288891 lncRNA downstream 28076 98993358 ~ 98993882 (-) True G1132319
TU1288902 lncRNA downstream 34763 98986216 ~ 98987195 (-) True G1132326
TU1288922 lncRNA upstream 7905 99033293 ~ 99033538 (-) True G1132339
TU1288931 lncRNA upstream 21030 99046418 ~ 99047786 (-) False G1132342
TU1288932 lncRNA upstream 21030 99046418 ~ 99047786 (-) False G1132342
TU1288933 lncRNA upstream 21030 99046418 ~ 99047786 (-) False G1132342
TU1288934 lncRNA upstream 21030 99046418 ~ 99047786 (-) False G1132342
XM_036939568.1 mRNA downstream 2325 98981761 ~ 99019633 (-) False LOC110539185
XM_036939463.1 mRNA downstream 115515 98766105 ~ 98906443 (-) True LOC110514497
XM_036939467.1 mRNA downstream 214950 98766105 ~ 98807008 (-) False LOC110514497
XM_036939466.1 mRNA downstream 215352 98766105 ~ 98806606 (-) False LOC110514497
XM_036939464.1 mRNA downstream 228573 98766105 ~ 98793385 (-) False LOC110514497
XM_036939468.1 mRNA upstream 2780 99028168 ~ 99036661 (-) False btr02
XM_036939469.1 mRNA upstream 2780 99028168 ~ 99036662 (-) False btr02
XM_036939470.1 mRNA upstream 2780 99028168 ~ 99036662 (-) False btr02
XM_036939471.1 mRNA upstream 2780 99028168 ~ 99040834 (-) True btr02
XM_036939474.1 mRNA upstream 16631 99042019 ~ 99044872 (-) False LOC110538834
TU1288904 other downstream 11846 99006627 ~ 99010112 (-) True G1132328
TU1288236 other downstream 638143 98382970 ~ 98383815 (-) True G1131863
TU1288159 other downstream 762271 98258882 ~ 98259687 (-) True LOC118936513
TU1287948 other downstream 1047238 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 1161440 97857599 ~ 97860518 (-) True G1131666
TU1288947 other upstream 28116 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 66328 99091716 ~ 99092238 (-) True LOC110538840
TU1289204 other upstream 140560 99165948 ~ 99166607 (-) True G1132564
TU1289215 other upstream 148277 99173665 ~ 99175908 (-) False G1132569
TU1289219 other upstream 156573 99181961 ~ 99182915 (-) False LOC110538845

Expression Profile