RNA id: XM_036939471.1


Basic Information

Item Value
RNA id XM_036939471.1
length 3319
RNA type mRNA
GC content 0.53
exon number 10
gene id btr02
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99028168 ~ 99040834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCACCACATAGTCTCATCCACAGGCTCAACTGATACAGTACAGAGAGACAGCGCAGGCTAGTGGACGAGACTAGCTACTACagggctagctctggtccagggtgttagtgaACCTTCAGGAAGGCTCAGCGTTAGCAAGCCACACTAacacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctaataCAGGGCCTGGTGCTGCtgtttgacagctctaacaccctggaccagagctgtttgacagctctaacaccctggaccagagctaatgCAGGGCCCGGTGCTGCtgtttgacagctctaacaccctggaccagagctaatgCAGGGCCCGGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctaatgCAGGGCCCGGTGCTGCtgtttgacagctctaacaccctggaccagagctgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCTGTTTGTCAGctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCTGTTTGTCAGCTCTAACAGGGTGGGGCCTTACCTAAGATTTGCCCCTTCTCCAAGTGTGCACTTGTTAACTTCACTTTTAATTATTTTAAATTAATATAGGAAATACAGAAACTTCCTCTAGCCTATAGTCCATGGCTCCACCAATCAAATGCTTTTAAGTTTGTGGGGAGTGGtgaagtgcacacttcaggaggaaggagagataattgggacgTAGCCAATGTCTAAGGTTACAGACTCCTCCCAAAGCAAACGCCTGATTGACTGACAACAGCTGAACACACCTGGATTAAACCCCACCCACAAGCACCTTTCTAGGAACTCACACCTGTCACCTGGTCTCTGAATACAGGAAGAGACACAGACTGACTAGCGACCGAAGCTCTGAGCACCTGGCCAGGAACAAGTGGGACAGGGCATGgcatctaccatctctaccatcagcCTCGTCTCCGAGAGGCACTTCCTGTGCCCGCTGTGTAAGGACATCTTCAGCAGTCCTGTGACTACTCCGTGTGGCCACAGTTTCTGTCAGGACTGCCTGTGTGGGTACTGGACCCGGCACCGTTCAGACTACTGTCCCCTCTGCAAGAGGTTGTTCCATTCCAGGCCAGACCTTAGTATCAACCGCATCCTGGCTGACGTCTGTGACAACTACAGGAAGACACGGCCTGAGAGCCCTGAGGAGAGCCACGACACGCCACAGGTTGTAGACATTGACCAGATGATCCAGGAGCGACTGAAGAAAGTTGACAGACTCAGACACTCCCTGCAGCTCCTCAAAAACTCGTGTGTGAGGGAGGTGCGTGAGAGCCAGAAGGTGTTCTCTGCCCTTGTCAGTTCCATGGAGAAGAGCCACAAGGCCGTGGTGGCAGCCattgaggagagacagggggaggaggagAGGATTGTTGAGAAGCTGGTGAAGGAGCTGGAACAGGAGATTCTACAGCTGAGGAATGGAGACATTGACCTGGGGCCTTGTCATTCTCAGCAGAGCAATGATGAgctctgtggtggtggtggtggtcagaAGAGTGTTGCAGTGAGCACCACTTCCACCACGGGCTACTCTGAGAGGAGGGACTGGTCCAAGGTTTCCATGGAGACAGACCCCTGTATGGGCGTGACCAGGAGAGCAGTGTCAGACCTGATGGACGTGGTTAAAGGAGAGCTCCGTAGACTCTCTAAAGCTGAGCTgaagaaaatacagaaatacacagTAGACATCTCCCTGAGTCCCAAGACGGCCCACGCCTTCCTCTCGGTCTCAGACGACCGGAAACAGGTgcgacacacagacaaacaccagGAGGTCCCAGACAACCCCAAGAGGTTTGACCGCGTGGCCAACATCCTGGGAAGAGAATCCTTCAGCAGCGGCAGgtactactgggaggtggaggtgggagagaAGATTGAGTGGAACCTGGGCGTGGCCAGACAGTCCATCAACAGGAAAGGGAAGTTTACAGTCAGCCCAGCCAATGGCTTCTGGACACTGAGCCTAAAGAGCGGGGGTCAATACGTAGCTAACACCTCCCCCACTGTCACCCCCTTGGGCCTGGAGCAGAAGCCCAGGAAGGTGGGGGTGTTTCTGGACTacgtggagggccgagtgtcctTCTACTGCGCGGAGACTGGGGTTCACATCCATACGTTTACAGATGGCTTCACTGATAGACTACATCCACTCTTTAGTCCTGGGAGGCAACATGGGGGCAGGAATATCGCTCCTCTGACTATTTGTACTACCTTCTGTAGCATCTGAGCCCCCTGACTTAACCCCCACGCCTGGAATAGTCATTTAATCATGTCATTATGTAGCCTAATGTAGAATAAGGCTCACTCGGTCCTCTCTCACGTCTGCATTTTCAGTTGGATAAACCGGCttctttcctaatattgagttaatgcagtgtctgtgttATCAGGCAATGAGCTGGGTAATCAATAGTAATgctataatttattttaattatAATTTATGACAGTATATATGAAccctcaaatgtattttttttacaaagtgTTGACTTTTTTTAAAATTCTGTGCATCATTAAAAAATCTGTAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288915 lncRNA downstream 211 99022927 ~ 99027957 (-) True LOC110538838
TU1288914 lncRNA downstream 2776 99022927 ~ 99025392 (-) False LOC110538838
TU1288887 lncRNA downstream 8595 99017082 ~ 99019573 (-) True LOC110539185
TU1288908 lncRNA downstream 15252 99011586 ~ 99012916 (-) True G1132330
TU1288891 lncRNA downstream 34286 98993358 ~ 98993882 (-) True G1132319
TU1288931 lncRNA upstream 5584 99046418 ~ 99047786 (-) False G1132342
TU1288932 lncRNA upstream 5584 99046418 ~ 99047786 (-) False G1132342
TU1288933 lncRNA upstream 5584 99046418 ~ 99047786 (-) False G1132342
TU1288934 lncRNA upstream 5584 99046418 ~ 99047786 (-) False G1132342
TU1288936 lncRNA upstream 5584 99046418 ~ 99047786 (-) False G1132342
XM_021625816.2 mRNA downstream 2780 99021958 ~ 99025388 (-) False LOC110538838
XM_036939568.1 mRNA downstream 8535 98981761 ~ 99019633 (-) False LOC110539185
XM_036939463.1 mRNA downstream 121725 98766105 ~ 98906443 (-) True LOC110514497
XM_036939467.1 mRNA downstream 221160 98766105 ~ 98807008 (-) False LOC110514497
XM_036939466.1 mRNA downstream 221562 98766105 ~ 98806606 (-) False LOC110514497
XM_036939474.1 mRNA upstream 1185 99042019 ~ 99044872 (-) False LOC110538834
XM_036939473.1 mRNA upstream 1185 99042019 ~ 99045619 (-) False LOC110538834
XR_005035258.1 mRNA upstream 1185 99042019 ~ 99045620 (-) True LOC110538834
XM_036939569.1 mRNA upstream 12450 99053284 ~ 99058841 (-) False LOC118937838
XM_021625818.2 mRNA upstream 49787 99090621 ~ 99092245 (-) False LOC110538840
TU1288904 other downstream 18056 99006627 ~ 99010112 (-) True G1132328
TU1288236 other downstream 644353 98382970 ~ 98383815 (-) True G1131863
TU1288159 other downstream 768481 98258882 ~ 98259687 (-) True LOC118936513
TU1287948 other downstream 1053448 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 1167650 97857599 ~ 97860518 (-) True G1131666
TU1288947 other upstream 12670 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 50882 99091716 ~ 99092238 (-) True LOC110538840
TU1289204 other upstream 125114 99165948 ~ 99166607 (-) True G1132564
TU1289215 other upstream 132831 99173665 ~ 99175908 (-) False G1132569
TU1289219 other upstream 141127 99181961 ~ 99182915 (-) False LOC110538845

Expression Profile