RNA id: XR_005035258.1


Basic Information

Item Value
RNA id XR_005035258.1
length 2096
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110538834
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99042019 ~ 99045620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGCTGTAGCCGCTGATGTCACTTTCGATTTGACTCTAAATTATAAAGTTGACGTTCTAAAGCCTACAGTTCAAACCGATTTGATCAGATTTGTATATGCCTATATCTTCTCATTTAAATTATATCGTGAACTGGATTATTATGCAACGATAAACGATATAGTTTGTTATTTTAGCGTGTGTGAATGAATAAAGTTTCGGAGCGCTCGACCGAACGACGTTGTTGACAAAAATGAAGACGTAGAATTCTCCAGTCGGCAAATTCCGTTAAGCTGCACAACTATGGCATCCAATGAGCGTTCTCAACcgaaaaggaggaggaagagcagcatggAGGAGCCCCCTTATTtgtcaggCGATGCAGAGTTTAGAGTCCTTCTCTTTGGGAGAAGTGGCCGCAGTCAATTTTCTCTGGCAAACTTCATTCTGGGGACAGATGTGTTCAGCGATGAGCTCTGCCACAttacagagagtcagagacacaGGAGCGAGGCGTTCGAGAGAAAACTAGCTGTGGTCAACACTCCAAACCTCTCTGAGTACCAGGCATCCCAGAAAGAGCTGAGAAGAGTGTTCAagttgtctgtgtgtatgtcctcTCCTGGTCCCTACGTCGTTCTCTTTGCATTCGACCTGAACAACATCTCACCAAGTGCAGCAAGCATCCTGGAACTCGTCACAAAGCACTTTGGGGACAGCATCTTGAACCACATGATGGTTGTGGTGTGTCAtgtagaggagaaggaggattCAGCTCTGGAGGAGAAAGTCCAGACTAACAGAGACTTCAGGGAGCTCCTGGAGAAGTGTGGCCGAAGGTATCACCTCTTCAATGAGAGGAAGGCCCGGAGAGATGAGAAGGTTTCCAGACAGCTCCTGGAGAAGATGGACGACATGGTGAGGGAAAACGGCTGCAGATTCTACTCCAATCACCAATACcaggaagcagaggagagaaTCCAGAAAGAGGAGCGTTTCATGAtgaaagggagaaagaaagagatgctgACAAAGAGGAAGGAGCTGGAGAGCAGGTACACAGGGGAAGGTCTTGAAAAGGAGCTGCTGCAGTTTGAGACCGGGATAAGAGTAGAGAACCGAGCGACGGCTGAGAGGAAGATCTCAGAGGTACTGGGATTTACTCTCACAGCAGTTGACTATGCTGCTGCGGTAGGTAAAGGGGCAGCTCTAGGGGCTTTATGTGGAGCGGTCGTGGGGTTTGAGGGTATGGCGGTGGGAGCCGCTGTAGGTGCCGTCGTCGGCGGGGGCATAGGAGGTGCTGTCAGTGCGGCATGGGGTTACCTCACAAACACTGCTGCACAAATGAATAGACGTTGAGACAATGCTGCTTACATCGATGATGCATTGcccagtttaacagattgtgtcatTTTGGTGCCGTTCCTGcccagtttaacagattgtgtcatTTTGGTGCCGTTCCTGCCCAGTGTAACAGATGGTGTCATTTTGGTGCCGTTCCTGcccagtttaacagattgtgtcatTTTGGTGTCGTTCCTGcccagtttaacagattgtgtcatTTTGGTGCCGTTCCTGCCCAGTTTAACAGATGGTGTCATTTTGGTGCCGTTCCTGcccagtttaacagattgtgtcatTTTGGTGCCGTTCCTGcccagtttaacagattgtgtcatTTTGATGCCGTTCCTGCCCAGTTTAACAGATGGTGTCATTTTGGTGCCGTTCCTGCCCAGTTTAACAGATGGTGTCATTTTGGTGCCGTTCCTGcccagtttaacagattgtgtcatTTTGGTGCCGTTCCTGcccagtttaacagattgtgtcatTTTGGTGCCGTTCCTGCCCAGTTTAACACCACTGTGTAGAGGTCTGAGGCTAATCAGTTcagtaatacattttatttgtcagtGAGAAAATATTCAGAGATGTATGTTTTGTAGATATTAGACGCTGTTGATTTGTTTTTGGCTGCTGATCTGGTGATGGTTTCTAGTCGGTTATTTTAAACAGATTCATTGTTGAAATACGTAATCATGAATAAAGGGAAGATCCTTTAACAATGGAATATTTAAACACGTAATAAATGTACTGTTGCTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288922 lncRNA downstream 8481 99033293 ~ 99033538 (-) True G1132339
TU1288915 lncRNA downstream 14062 99022927 ~ 99027957 (-) True LOC110538838
TU1288914 lncRNA downstream 16627 99022927 ~ 99025392 (-) False LOC110538838
TU1288887 lncRNA downstream 22446 99017082 ~ 99019573 (-) True LOC110539185
TU1288908 lncRNA downstream 29103 99011586 ~ 99012916 (-) True G1132330
TU1288931 lncRNA upstream 798 99046418 ~ 99047786 (-) False G1132342
TU1288932 lncRNA upstream 798 99046418 ~ 99047786 (-) False G1132342
TU1288933 lncRNA upstream 798 99046418 ~ 99047786 (-) False G1132342
TU1288934 lncRNA upstream 798 99046418 ~ 99047786 (-) False G1132342
TU1288936 lncRNA upstream 798 99046418 ~ 99047786 (-) False G1132342
XM_036939471.1 mRNA downstream 1185 99028168 ~ 99040834 (-) True btr02
XM_036939469.1 mRNA downstream 5357 99028168 ~ 99036662 (-) False btr02
XM_036939470.1 mRNA downstream 5357 99028168 ~ 99036662 (-) False btr02
XM_036939468.1 mRNA downstream 5358 99028168 ~ 99036661 (-) False btr02
XM_021625816.2 mRNA downstream 16631 99021958 ~ 99025388 (-) False LOC110538838
XM_036939569.1 mRNA upstream 7664 99053284 ~ 99058841 (-) False LOC118937838
XM_021625818.2 mRNA upstream 45001 99090621 ~ 99092245 (-) False LOC110538840
XM_021625826.2 mRNA upstream 132466 99178086 ~ 99183106 (-) False LOC110538845
XR_005035259.1 mRNA upstream 132466 99178086 ~ 99183106 (-) False LOC110538845
XM_036939487.1 mRNA upstream 172994 99218614 ~ 99231888 (-) True LOC110517411
TU1288904 other downstream 31907 99006627 ~ 99010112 (-) True G1132328
TU1288236 other downstream 658204 98382970 ~ 98383815 (-) True G1131863
TU1288159 other downstream 782332 98258882 ~ 98259687 (-) True LOC118936513
TU1287948 other downstream 1067299 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 1181501 97857599 ~ 97860518 (-) True G1131666
TU1288947 other upstream 7884 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 46096 99091716 ~ 99092238 (-) True LOC110538840
TU1289204 other upstream 120328 99165948 ~ 99166607 (-) True G1132564
TU1289215 other upstream 128045 99173665 ~ 99175908 (-) False G1132569
TU1289219 other upstream 136341 99181961 ~ 99182915 (-) False LOC110538845

Expression Profile