RNA id: XM_021625826.2



Basic Information


Item Value
RNA id XM_021625826.2
length 1305
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110538845
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99178086 ~ 99183106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACGGAAGTGATTCAATGTTTTGGTTCCGGGTCCGTCGGTGATGAAATAACTAATGAGAAATTGGATTTGTAAAGATTTGCTTCTTATTTGAGCAAACATAGCAACTAAAGTTGATCATATGAGCGTCGCCATGGTGTCAAAGTAAGCTGGAGAGGCTTGCTTGCTAGCTGACTAGTCTCGACAATTTTGATACGGATCAAGTCTTTGTTGGTTTATACGAAATGTGTTTGCTGCTCGGTGCAACCGGTGTTGGAAAAACTCTTCTCTTGAAACGTTTACAGAAGCTCAGTGTGAGAGATGGCACAACTGATTTAGGGGAACCCCCTGTTACTCTACCTACGGTGGGCaccaacctgacagacctgacTCTGAAGAGGAAGAGGGTGACTGTGAGAGAGCTGGGAGGCTGTATGAGTCCTATCTGGCCCAGTTACTATACGGACTGCTCCTCTGTCATCTTCATGGTGGACTCTGCTAACACCACCCAGATCTCGTCGTCCTGTATCCagctcctgtctgtcctctctgctgAACCTCTCCACACAGCCTCTGTCCTGGTTATCTTCAACAAGAGGGACCTCCCTTGTACCATGAGTCTCGTAGAGATGATGTCACTGTTCAGGATGGATGACATCATCGCCTCTGCCACCCAGCCAATCACGACCGTGGAACTGAGCGCTCGTTCCGGCCAGGGACTCCAGGAGGTGTTGGGCTGGCTGGACTCcaccctgactgactgacaagAGTGATGTCATAGAAGCATCTTCCTTCCAGGAAGCAGTTCCTCATTgctggtgctttcaagacaactgggaactctgggaaaaaatacgaggtcaaatcatgacgtcagtgattttCAGGTCAGAAAGTCGGTGCTGTAGGAGGCCCGAGTTTCCGAGTTGGAATTTCAAGTTGGATGACCGTAAAAAAAATAACAGTtatcttgaacgcactgaagtcagagatttctgagttcccagttgctttgaacgCACTGAGGTCAgagatttctgagttcccagttgctttgaacgcactgaagtcagagatttctgagttcccagttgctttgaacgCACTGAGGTCAgagatttctgagttcccagttgctttgaacgCACTGAGGTCAgagatttctgagttcccagttgctttgaacgCACTGAGGTCAGAGATTTCTGAGTTCCTAGTTGCTTTGAACGCACTGAGGTCAGatatttctgagttcccagttgctttgaacgCACTGAGGTCAgagatttctgagttcccagttgctttgaacgCACTGAGGTCAgagat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1289210 lncRNA downstream 608 99174789 ~ 99177478 (-) False G1132569
TU1289213 lncRNA downstream 608 99174789 ~ 99177478 (-) False G1132569
TU1289211 lncRNA downstream 608 99175974 ~ 99177478 (-) False G1132569
TU1289212 lncRNA downstream 608 99175974 ~ 99177478 (-) False G1132569
TU1289214 lncRNA downstream 608 99175974 ~ 99177478 (-) False G1132569
TU1289232 lncRNA upstream 4101 99187207 ~ 99187957 (-) True G1132574
TU1289265 lncRNA upstream 75132 99258238 ~ 99293690 (-) True G1132595
TU1289269 lncRNA upstream 83505 99266611 ~ 99269289 (-) True G1132599
TU1289275 lncRNA upstream 98344 99281450 ~ 99281916 (-) True G1132605
TU1289289 lncRNA upstream 129293 99312399 ~ 99313594 (-) False G1132619
XM_021625818.2 mRNA downstream 85841 99090621 ~ 99092245 (-) False LOC110538840
XM_036939569.1 mRNA downstream 119245 99053284 ~ 99058841 (-) False LOC118937838
XR_005035258.1 mRNA downstream 132466 99042019 ~ 99045620 (-) True LOC110538834
XM_036939473.1 mRNA downstream 132467 99042019 ~ 99045619 (-) False LOC110538834
XM_036939474.1 mRNA downstream 133214 99042019 ~ 99044872 (-) False LOC110538834
XM_036939487.1 mRNA upstream 35508 99218614 ~ 99231888 (-) True LOC110517411
XM_036939488.1 mRNA upstream 168423 99351529 ~ 99380971 (-) False LOC110538879
XM_036939490.1 mRNA upstream 356202 99539308 ~ 99556218 (-) False LOC110538877
XM_036939489.1 mRNA upstream 356202 99539308 ~ 99556315 (-) True LOC110538877
XM_036939577.1 mRNA upstream 380626 99563732 ~ 99631073 (-) False LOC118937841
TU1289215 other downstream 2178 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 11479 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 85848 99091716 ~ 99092238 (-) True LOC110538840
TU1288947 other downstream 118830 99053504 ~ 99059256 (-) True LOC118937838
TU1288904 other downstream 167974 99006627 ~ 99010112 (-) True G1132328
TU1289296 other upstream 143406 99326512 ~ 99326924 (-) True G1132625
TU1289696 other upstream 657333 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 657333 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 740954 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 740954 99924060 ~ 99924652 (-) True G1133028

Expression Profile