RNA id: TU1289686


Basic Information

Item Value
RNA id TU1289686
length 757
lncRNA type read_through
GC content 0.50
exon number 4
gene id LOC118937841
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99563732 ~ 99631073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGATAAAGCCTTACAAAGTGAGACAGGAAACCTGGACcttttcctccgcttccttctgggtctctcactggagtccaatcagaagcACTTACGAGGTCTACTGACAAAGACAAGAAGCAGCTCACAGAGCCATGAAGAAACAGTCAAGTACATCCAGGAGAAGATCAGGGACAGTCCATCTACAGAGAGGTGCATCAATttgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGCTACCTGAGATCAGGAAGTGTCTCCAGTGATGAACTCTCACCTTcacagtggtcagctctggtctttgtgttgctgacttcagaaaaggagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtcttCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAGCTGCTCTgctgtcaggctgtggagTCACGGAcaaaggctgtgcttctctggcctCAGCTCTgaagtcaaacccctcacacctgagagagctggacctgagtaacaatgacctgaaggattcaggagtgaagcttcTCTCTGatggactggggaatccccactgtaaactggagactctgaggctgtcaggctgtctagtcacagaggaaggttgtgcttctctggtctcagctctgaagtcaaacccctcccacctgagagagctggatctgagtaacaatgacctgaaggattcaggagtgaagcttcTCTCTGatggactgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289702 lncRNA downstream 1916 99566329 ~ 99566862 (-) True G1132902
TU1289437 lncRNA downstream 8520 99560053 ~ 99560258 (-) True G1132733
TU1289436 lncRNA downstream 9426 99559110 ~ 99559352 (-) True G1132732
TU1289432 lncRNA downstream 15803 99549556 ~ 99552975 (-) True G1132728
TU1289431 lncRNA downstream 17870 99549556 ~ 99550908 (-) False G1132728
TU1289718 lncRNA upstream 5206 99616668 ~ 99661202 (-) True G1132918
TU1289721 lncRNA upstream 12344 99623806 ~ 99624613 (-) True G1132921
TU1289729 lncRNA upstream 32627 99644089 ~ 99644786 (-) True G1132929
TU1289701 lncRNA upstream 45409 99656871 ~ 99752959 (-) True G1132901
TU1289744 lncRNA upstream 81840 99693302 ~ 99693700 (-) True G1132941
XM_036939489.1 mRNA downstream 12463 99539308 ~ 99556315 (-) True LOC110538877
XM_036939490.1 mRNA downstream 12560 99539308 ~ 99556218 (-) False LOC110538877
XM_036939488.1 mRNA downstream 187807 99351529 ~ 99380971 (-) False LOC110538879
XM_036939487.1 mRNA downstream 336890 99218614 ~ 99231888 (-) True LOC110517411
XR_005035259.1 mRNA downstream 385672 99178086 ~ 99183106 (-) False LOC110538845
XM_036939642.1 mRNA upstream 28177 99639639 ~ 99672638 (-) True LOC110485298
XM_036939641.1 mRNA upstream 217968 99829430 ~ 100834884 (-) False LOC110539068
XR_005035282.1 mRNA upstream 238694 99850156 ~ 99857256 (-) False LOC110538873
XM_036939601.1 mRNA upstream 335274 99946736 ~ 99965247 (-) True LOC110539071
XR_005035275.1 mRNA upstream 354961 99966423 ~ 99968463 (-) True LOC118937866
TU1289296 other downstream 241854 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 385863 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 392870 99173665 ~ 99175908 (-) False G1132569
TU1289204 other downstream 402171 99165948 ~ 99166607 (-) True G1132564
TU1289169 other downstream 476540 99091716 ~ 99092238 (-) True LOC110538840
TU1289696 other upstream 228977 99840439 ~ 99842926 (-) False LOC110539068
TU1289697 other upstream 228977 99840439 ~ 99846986 (-) False LOC110539068
TU1289875 other upstream 312598 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 312598 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 598995 100210457 ~ 100211148 (-) True G1134054

Expression Profile