RNA id: TU1289695


Basic Information

Item Value
RNA id TU1289695
length 397
lncRNA type read_through
GC content 0.44
exon number 3
gene id LOC110538873
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99850156 ~ 99857256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttGTTATCAGGAAGGTGCTCTCTCAGCACAACGGAAAATATCTCAATGACTTGACATGTTCTGGTTGTGAATTCAGGCTACAAGacGACAgttctctaaaatgagtctctctgggaagagagaggaggggggccctgcctctaaaatTAGACTCTCTGGGGGACATGACACCAAAGCCAAGAGttcaatcaagcaggagagaccagcctccccTGTGCCCAGCGGTCTGTCCATGAAGAGTGACTGGTCTATGGGTACACCTATAAAGTTTAGAGAGGGAGACTTTTCTCTGAAACAAAGGTAAGAAAAACTCATGGGTCAGTGAGTTAAACAACACTATCTCTGGTCATTTGTCCTCTCCAATTTTcccatttatttttgttgttttcatAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289803 lncRNA downstream 56947 99789870 ~ 99793262 (-) True G1132978
TU1289784 lncRNA downstream 84606 99764315 ~ 99765603 (-) False G1132971
TU1289841 lncRNA upstream 2524 99859645 ~ 99860074 (-) True G1133000
TU1289852 lncRNA upstream 21757 99878878 ~ 99880576 (-) True G1133008
TU1289853 lncRNA upstream 25451 99882572 ~ 99883918 (-) True G1133009
TU1289856 lncRNA upstream 28879 99886000 ~ 99886219 (-) True G1133012
TU1289872 lncRNA upstream 60553 99917674 ~ 99919868 (-) False G1133026
XM_036939642.1 mRNA downstream 177571 99639639 ~ 99672638 (-) True LOC110485298
XM_036939577.1 mRNA downstream 219136 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA downstream 245551 99603751 ~ 99604658 (-) True LOC118937859
XM_036939489.1 mRNA downstream 293894 99539308 ~ 99556315 (-) True LOC110538877
XM_036939490.1 mRNA downstream 293991 99539308 ~ 99556218 (-) False LOC110538877
XM_036939601.1 mRNA upstream 89615 99946736 ~ 99965247 (-) True LOC110539071
XR_005035275.1 mRNA upstream 109302 99966423 ~ 99968463 (-) True LOC118937866
XM_036939620.1 mRNA upstream 112553 99969674 ~ 99985905 (-) True LOC110539073
XM_036939630.1 mRNA upstream 401109 100258230 ~ 100295591 (-) False LOC118937853
XM_036939635.1 mRNA upstream 577130 100434251 ~ 100462726 (-) True carhsp1
TU1289697 other downstream 3223 99840439 ~ 99846986 (-) False LOC110539068
TU1289696 other downstream 7283 99840439 ~ 99842926 (-) False LOC110539068
TU1289296 other downstream 523285 99326512 ~ 99326924 (-) True G1132625
TU1289219 other downstream 667294 99181961 ~ 99182915 (-) False LOC110538845
TU1289215 other downstream 674301 99173665 ~ 99175908 (-) False G1132569
TU1289875 other upstream 66939 99924060 ~ 99925126 (-) False G1133028
TU1289877 other upstream 66939 99924060 ~ 99924652 (-) True G1133028
TU1291316 other upstream 353336 100210457 ~ 100211148 (-) True G1134054
TU1291344 other upstream 401533 100258654 ~ 100295566 (-) True LOC118937853
TU1291428 other upstream 563836 100420957 ~ 100423066 (-) True G1134117

Expression Profile