RNA id: XM_036939601.1


Basic Information

Item Value
RNA id XM_036939601.1
length 3899
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC110539071
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99946736 ~ 99965247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaggggttagaggttatattTCATGGCAGCCTCTCCTATACCACTATTCCCAACATGTTATACACCAGAGGTTGTAAATAAAACCTCTAAAGGTTGGTCTGACTTGTATTGGTATGGTGGGGATCTGAAACCCATAGCCGAATGGATTCAGAGCTGACTGAGGCCATGCCAGCGGTGTGGATCAGCTCCTCGCTACTGAGGTCCAGGGCAACTCACCTCAGACAGCTCAGTGTGTTCTCTAGAAGGGCTGTGTTACAACCTGTACAGGTGGTCTCCTCACTACAGAAGACATGGACACCTGGGAACCCAACCTGGTGCTGTAGATCCCTCCATGTGGACAGTCCCCCCCTGGTCCCAGGGCAGAGCTTCAGCTACGTCCATGGGGCCTCCTCAGTGTCCCTGCTGGGCCAGACGGTGGGTCAGAGTTTGCAGGCGGCAGCTGACCGCTGGCCCCACAGAGAGGCCCTGGTGTTCCTGCAGGATGGAGTCCGTAAGACCTTCTCCCAGTTTCAGCAGGACgtTGACCAGGCCGCTGCAGGTCTCCTGGCCCTGGGTCTGAAGAGAGGGGACAGACTAGGAGTCTGGGGGCCCAACACATACCACTGGATCCTGTTTCAGTTCGCCACAGCCAAGGCTGGCATCATACTGGTGTCGATAAACCCAGCCTATCAGCTGAAGGAGCTGGAGTTCACCCTGGGGAAGgtGCAGTGTAAAGCTGTGGTGTGTCCCACCCAGTTTAAGACCCAGAGGTTCTGTGACACGCTGAGACAGATCTGCCCAGAGATGGACACAGCAGAGTCAGGGGTCTTTAGGAGCTCCAGACTACCTGACCTGCGTATGGTGATTGtgacagacagcagacagacagggactgtaCATGTAGAGGATGTGATGCGGGCTGGAAGCAGACAGCACCACCAGGAGCTGCAGGACCTGCAGACCAAACTGTCCTTTGACGACCCCATCAACATACAGTTCACATCCGGAACAACAGGAAATCCTAAAGGTGCCACCCTCTCCCACCACAACATCGTCAACAACGCCTATTTTGTGGGTCTTCGTCTGGGATTCAACTGGAAGCCTATAAGAGCGTGTGTTCCtgttcctctgtaccactgcatGGGCTCAGTGTTAGGAGCGATGTGTTTGGCACTGCATGGCATCACCCTGGTCTTCCCCTCTGCTGGGTACGACAGCCGTGCCAACCTGGAGGCCATTCAGAATGAAAGGTGTAATTTCCTCTACGGAACTCCTACCATGTACATTGACATGCTTGGATAGCCTGACCTACACAACTATGACCTGTCATCAGTTGAATCTGggtTTATGAGTGGGTCTCTTTGTCCTCCTGAAGTCATGAGGAAACTCAGAACTGATATGAATGTCAAGGATATGATAATAGGCTATGGGACCACAGAGAACAGCCCTGTAACATTCCTTGGTTTCCTGCGAGACAACGAGGAACTGAAGAACGAGACGGTGGGATGTATCCTGAACCACACTGAGGCGAAGGTGGTGGATGTGTCCTCTGGAGAGGTGGTTCCTCTGGGGGATCCAGGAGAGCTGCTGATCAGAGCTTACTCTGTTATGCTGGAGTACTGGGACGACCCAGACAAGACCAGTGAGGCTATCGCCAAAGACCGCTGGTACAGAACCGGTGACATAGCCAGTCTGGACAGGTTTGGGTACTGCCGTATAGTGGGACGTATAAAGGACATGATTATACGTGGAGGAGAGAACATCTACCCTGCTGAGATAGAGAAGTTCCTTCACACCCATCCCAATGTACAGGAGGCCCAGgtGATTGGCGTGAGAGATGAGAGGTTGGGGGAACAGGTGTGTGCCTGTATCAGACTGAAGGAGGGACTGGACTGTAGcagagaggagatcagagactTCTGCAAGGGACAgATTTCTCACTTCAAGATCCCCCACTATGTGGTGTTTGTGGACAGCTATCCACTGACTGCCTCTGGAAAGATCCAGAAGAATAaactgagggaggagatggagaagaagCTGGGTCTGTGATGGACAGAGGGACCTAGACAGACTGGGCTAATAGCAACCCACATTGAGCACCGGTTACACCCGAGGTGATCTCTTGTTTCAACCATCAATACGCACAAAGATCATCCACACAGTGAATCTGAATTACAACCACTGACATTTAGttgtggctgctgccaacattttCATGTTTTACTATTTTGTCCTCTGGTGGGTAATATCTTCAGATGAATCACTTAACTATTTGACAATCATTTTGTTCAAATGAAATGAGGCATATCCTTGTTTACCACAGAGAATCTACTGTGGCAAGTGACCCTCCACATGTTATGAATGGAAAGGTCATGTTGGTGTACTTACTTGTATTTCCAATGTATGTTATCCATTAATGAGAAATCCATCAATTAATATAATCCATTAATGAGTAATCCATCCATTAATGTAATCCATTAACTTGCCTTTATAATCAAAAGGGGAACATACAATATCCCTGAACTGTCCACATCTAACATTGGTAACTAAATCAAGCCAATCATGATTTGAGTTAACATAATCTGTTTTCATTAAGGACTGTGTGTCTGCTTTAAGGGTTGAGTTAATATAATCTATGTAAAATGGCCCGACTGTGTGTCTTCTTTAGAACCACTAATGTTTTCTGTTCATTGCTTGTAGTCCTTCACCAACACACGATTCAACATAAACAATAGATGCCTATACTTTTCAGTCTCAGCCAGGAAACTGGCCTTAAAACTGTTCCACCTCTTCCAGAACTCTAGAACTATCATTTGGAGTGCTTGCTTTATCACATGGTCTATgatgtcacgaaccggctcgaagTTCTTAACAAAAGGGAGACCACGTAGCGACAAGGAATGACAAAATATAGACAACTgaatacaattaacaatggtgtgtgtaatcagtagtgtgagtgttttgcatgcatacATGTGATAATGctgggtgttgaaaggtgccaaagcaaacaacaaaatctataaaggtgtctgcatggagtcTCCTCCATTAATGGGgaaatgtatacatttcaatcaggactgactaatcagaatactattatgttactgtatggatgtatgaatcttattataatcctagtactgaatataacatgtgtaaatataatcaagaattagaacaatgactgtctgttccttggtagaaactaatgaacttatcgtcagactggctggaatgcttatctacacagggagACCTTGGGCTGGTCGTAAATTATCTAAACTGGTGGTGGATGATGTGGGAAGACTTGTaaactatactgccattgtatcagagtggaggagggtaggaaggcttgtgaactatactgccatggtatcagagtggaggagggtaggaaggcttgtgaactatactgccatGGTATCGGAGTGGAGGAGGGtaggaaggcttgtgaactatactgccatggtatcagagtggaggagggtaggaaggcttgtgaactatactgccatGGTATCGGAGTGgaggaaggcttgtgaactatactgccatGGTATCGGAGTGGAGGAGGGtaggaaggcttgtgaactatactgccatggtatcagagtggaggagggtaggaaggcttgtgaactatactgccatggtatcagagtggaggagggtaggaaggcttgtgaactatactgccatggtatcagagtggaggagggtaggaaggcttgtgaactatactgccatggtatcagagtggaggagggtaggaaggcttgtgaactatactgccatGGAATCAGAGTGGAGGAGGGACAGTTTAAAACCTATGATGTCACTTTTAGTTTGTAAACTGTACCAtgatcagtactctcgagaataaacgctattgattgattttga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289879 lncRNA downstream 3153 99930621 ~ 99943583 (-) True G1133030
TU1289872 lncRNA downstream 26868 99917674 ~ 99919868 (-) False G1133026
TU1289873 lncRNA downstream 26868 99917793 ~ 99919868 (-) True G1133026
TU1289856 lncRNA downstream 60517 99886000 ~ 99886219 (-) True G1133012
TU1289853 lncRNA downstream 62818 99882572 ~ 99883918 (-) True G1133009
TU1289837 lncRNA upstream 10395 99975642 ~ 99976958 (-) True G1132996
TU1289893 lncRNA upstream 24302 99989549 ~ 99990363 (-) True G1133042
TU1289896 lncRNA upstream 26333 99991580 ~ 99991845 (-) True G1133043
TU1289897 lncRNA upstream 29836 99995083 ~ 99995357 (-) True G1133044
TU1289899 lncRNA upstream 36166 100001413 ~ 100002086 (-) True G1133046
XR_005035282.1 mRNA downstream 89480 99850156 ~ 99857256 (-) False LOC110538873
XM_036939642.1 mRNA downstream 274098 99639639 ~ 99672638 (-) True LOC110485298
XM_036939577.1 mRNA downstream 315663 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA downstream 342078 99603751 ~ 99604658 (-) True LOC118937859
XM_036939489.1 mRNA downstream 390421 99539308 ~ 99556315 (-) True LOC110538877
XR_005035275.1 mRNA upstream 1176 99966423 ~ 99968463 (-) True LOC118937866
XM_036939620.1 mRNA upstream 4427 99969674 ~ 99985905 (-) True LOC110539073
XM_036939630.1 mRNA upstream 292983 100258230 ~ 100295591 (-) False LOC118937853
XM_036939635.1 mRNA upstream 469004 100434251 ~ 100462726 (-) True carhsp1
XM_036939627.1 mRNA upstream 508307 100473554 ~ 100499497 (-) True nat15
TU1289875 other downstream 21610 99924060 ~ 99925126 (-) False G1133028
TU1289877 other downstream 22084 99924060 ~ 99924652 (-) True G1133028
TU1289697 other downstream 99750 99840439 ~ 99846986 (-) False LOC110539068
TU1289696 other downstream 103810 99840439 ~ 99842926 (-) False LOC110539068
TU1289296 other downstream 619812 99326512 ~ 99326924 (-) True G1132625
TU1291316 other upstream 245210 100210457 ~ 100211148 (-) True G1134054
TU1291344 other upstream 293407 100258654 ~ 100295566 (-) True LOC118937853
TU1291428 other upstream 455710 100420957 ~ 100423066 (-) True G1134117
TU1291514 other upstream 538358 100503605 ~ 100504088 (-) True G1134183
TU1291403 other upstream 569603 100534850 ~ 100543369 (-) False eci1

Expression Profile