RNA id: XR_005035275.1


Basic Information

Item Value
RNA id XR_005035275.1
length 1959
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118937866
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99966423 ~ 99968463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatatatatatatactgtactgtgcaCCTGTTGGTGGTTAAATCTTATCCAGCTAACATCCTGTCTACCATAACCTGCAGAACAGAATATCCAGCAACAATAACCCTGCAGTCCAACCATCTAATGGGTATAGGGGTGAAGTTGCCTTAGATGCTGACCCTGGGTCAGTTTTTCCATTtaccccactaatggttaaggttaggattggggaggggaagctgatcctagatctgtacctaggggaaacctCACCCTAGAGCTATCTAACAGTGGGTCACGCTTATCCCTTTTTCTAGACTATAtcctagcctggttaaaccagactgaatgctGTGTTCACCATGAGGGGAGTGCTCAGTCTAGTTTTAATCAGGCTAAAAATGCTCGTCTTTGACTAATATGCAAATCGCTATTGGTGGCCATTTCGTCACGTTGGCTCCTGTCCTGTCGATGAAACGTTTGTAATAGAGAACCTCATCTCAGAATGACATGCCTCTTCCTGGTTTCTGTCGCTGATATTCATTTGTGGTGTATTTTCCatcccccattctgactgtctaTCTTCATCTGGGGGTTAATAGTGCCCCTCTCCTATCACAGCCTTAAATGAAAAGCCTTaaggccagtttcccagacacagattagaGCTGCAATGTGTAGCttttttgggtgacctgaccaaattcacatagaaatgttgtAGATCTGTTattttcattgaaagcaagtctaagaaggtGGTAGATCTGTTAtttttctatgcttcctgttttaTAGTTGTGTTTTTTGGGGTCttttactttgggttttgtacCAGCTTCAAatcagctgaaaatacaatgtttttggttattggacaatatatttcacagcggtttagatgctacgatgattctctacactatacatgcTTGCTTTCTCACAAGTTGAAATTCGAATTcaagcaaccaggaaatggcggtgCGATATCTGCTCAGTGCATCTTTTACGCCTAGTCTTGGACTCCATGGAGATTCTCCATTCAGCATGATTTAGAATCCAgcactaggcttaatctgtgtctggggaaaCTGGTCCTAAAACTATTCCACCTATTCTAGAACTATCATTTGGAGTGCTTGCTCCCATGGTCTATGATGTCACCCACCATGTCACTCTGAGTTCTATGTCAGCCTGTTGCTCTGTTCCCAACTATTCCACCTATTCTAGAACTATCATTTGGAGTGCTTGCTGACTCCCATGGTCTATGATGTCACCCACCTCTACCATGTCACTCTGAGTTCCATGTCAGCCTGTTGCTCTGTCCCCATATATACAGGTCTGGAACTAAGCATTGCTCTATGTCAGCCTGTTGCTATGTCCCCATATATACAGGTCTGGAACTAAGCATTGCTCTATGTCAGCCTGTTGCTCTGTCCCCATATATACAGGTCTGGAACTAAGCATTGTAACTCTGCCTAACAACACATTGGTACATACCAACGTCTGGCATTATTACAGTTCTATTTATTTCAGATGTCTATATGGCATGTTTAAAATGAAGAACCTGAGTTTTACTATTGTACATCCGTCCAAGATCACATATCATGATGTACAATTAGTTGTCCAGTCTGTTGGATAAAATGAAATAAAGATATTGAAAAATAAGTGCTGAAACTCTGTTTGTCCATCAGTCATGATGCAGCTTTATAAATCTCATGAGAAAGTGAACCTAAAGGTAATGCTTTCCTGACGTGTTGGTTTGAGAGGATAGAAGACCCATATTATAGGAGTTAGCCTCCCGCTGTGATTGGCTACAAACACACGACGCTGTCACTTTCCAGATGGACACACCcccaacacacatactgtacagatcCGCTAAACACACGGGGACAATTGCAACCCAAAAATATATAAAGGGGAATGTCCAGAATACGGTTGTCACAgttatcaaataaaatgttattgtaaACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289879 lncRNA downstream 22840 99930621 ~ 99943583 (-) True G1133030
TU1289872 lncRNA downstream 46555 99917674 ~ 99919868 (-) False G1133026
TU1289873 lncRNA downstream 46555 99917793 ~ 99919868 (-) True G1133026
TU1289856 lncRNA downstream 80204 99886000 ~ 99886219 (-) True G1133012
TU1289853 lncRNA downstream 82505 99882572 ~ 99883918 (-) True G1133009
TU1289837 lncRNA upstream 7179 99975642 ~ 99976958 (-) True G1132996
TU1289893 lncRNA upstream 21086 99989549 ~ 99990363 (-) True G1133042
TU1289896 lncRNA upstream 23117 99991580 ~ 99991845 (-) True G1133043
TU1289897 lncRNA upstream 26620 99995083 ~ 99995357 (-) True G1133044
TU1289899 lncRNA upstream 32950 100001413 ~ 100002086 (-) True G1133046
XM_036939601.1 mRNA downstream 1176 99946736 ~ 99965247 (-) True LOC110539071
XR_005035282.1 mRNA downstream 109167 99850156 ~ 99857256 (-) False LOC110538873
XM_036939642.1 mRNA downstream 293785 99639639 ~ 99672638 (-) True LOC110485298
XM_036939577.1 mRNA downstream 335350 99563732 ~ 99631073 (-) False LOC118937841
XM_036939637.1 mRNA downstream 361765 99603751 ~ 99604658 (-) True LOC118937859
XM_036939620.1 mRNA upstream 1211 99969674 ~ 99985905 (-) True LOC110539073
XM_036939630.1 mRNA upstream 289767 100258230 ~ 100295591 (-) False LOC118937853
XM_036939635.1 mRNA upstream 465788 100434251 ~ 100462726 (-) True carhsp1
XM_036939627.1 mRNA upstream 505091 100473554 ~ 100499497 (-) True nat15
XR_005035283.1 mRNA upstream 522192 100490655 ~ 100491915 (-) False LOC118937869
TU1289875 other downstream 41297 99924060 ~ 99925126 (-) False G1133028
TU1289877 other downstream 41771 99924060 ~ 99924652 (-) True G1133028
TU1289697 other downstream 119437 99840439 ~ 99846986 (-) False LOC110539068
TU1289696 other downstream 123497 99840439 ~ 99842926 (-) False LOC110539068
TU1289296 other downstream 639499 99326512 ~ 99326924 (-) True G1132625
TU1291316 other upstream 241994 100210457 ~ 100211148 (-) True G1134054
TU1291344 other upstream 290191 100258654 ~ 100295566 (-) True LOC118937853
TU1291428 other upstream 452494 100420957 ~ 100423066 (-) True G1134117
TU1291514 other upstream 535142 100503605 ~ 100504088 (-) True G1134183
TU1291403 other upstream 566387 100534850 ~ 100543369 (-) False eci1

Expression Profile