RNA id: XM_036939620.1


Basic Information

Item Value
RNA id XM_036939620.1
length 1530
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110539073
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99969674 ~ 99985905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACGTGCCACCGCGTCGGAAGTTACGTTACTTCCGAGAGTCGCGTTGGCGTTTTCTAAACAGAGACAGACATTTCGATGAAGACAGTCCAGGTCAGAAGATGTGGCGACTGTAACTGAATCTGGAGCCAGACACACGGATTGGACATGCCCAGGTTGTTCTGCCATGGACACAGACATGATACCAACATTCACTTCAAAAGACCAGGAGATTGACTACTGGAAGACCTTATCCCTCAAGTATAAGAACAGTTACCATGAGGCCCAGGAGGAGCTGCTGGAGTTTCAGGAAGGGAGCAGAGAGCTGGAGGCAGAGTTAGAGGCCCAGCTAGGACAGGCTGAACATCGCCTCAGAGACCTGCACACAGAGAACCAAAGACTGAAGAGCGAGTTGGACAACCTCAAGgagAAGTTGGAGCAGCAGTATTCTCAGAGCTATAagcaggtctccatgttagaggATGACCTGGGACAGACCAGAGGAATCAAGGAACAGCTTCATAAATACGTCAGAGAACTGGAGCAGGCCAACGATGACCTGGAGAGAGCCAAGAGGGCAACCATCGTCTCTCTGGAGGACTTTGAGGGTCGTCTGAACCAGGCCATAGAGAGGAATGCCTTCCTGGAGAGTGAGCTGGATGAGAAGGAGTCTCTACTGGTCTCAGTACAGCGACTAAAGGATGAAGCCAGAGacctgagACAGGAGATGGTGGTGAGGGAGAGGACTGCAGACAGGATGTCAGCCCCCAGCTCTCCTACCCTGGACATGGACAAGATGGACTCTGCTGTCCAGGCCTCCCTGTCCCTGCCTGTCACCCCTGTAGGGAAGGGCGTGGAACACCCGTTCATCAACCCTAAATCATCAGTGTTAACAAATGGCTGTGGGCCTGGCGGCTCACCTCTGACCCCATCAGCAAGAATCTCTGCTCTTAATATCGTTGGGGACCTTCTTAGAAAAGTGGGGGCGCTGGAGTCCAAGCTAGCTGCATGTAGGAACTTTGCCAAGGACCAGGCGGTGAGGAAAACCTACTCCACGTCGTCCACCAACATGATCACTGGGAACGGAAACCTCGTCAACAGCAACGCCACCAAGTTCTCCCACTCACTACACACCACCTACTACGACAAAACGGCTGTGAATGGACTGGACCCCAGCACCCTGAGTGCCCTGGCGTCGCCCcggactgtctcctctcctggcATGCTGCCTCTCACCGTTTAGCATGACCCCACCTCTGTACAAGCTCCCCGCAGAACAAGGTTATCCTCATCCTTCACCCCAAACTCCACCCTCCCCACACCAAATCTGTACAACTCCTGTACGCCCCGCAGAacactgagaggagagaacacttgaagaaccgtgtgtgtgtgtgtgtgtgtgtgtaggagagacACTTGACTGAATGATTGAAAAGGGCCTCACTCACCTATGAGTGGGTGGGGTTGGAtgctgggtgtgtttgtgtgtatttaacAAACAGGCACATGCCTCTGCCTGAGCTGTTCTTTGCTCGTGTGGACGATGTGT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16739 NDEL1; nuclear distribution protein NudE-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1289879 lncRNA downstream 26091 99930621 ~ 99943583 (-) True G1133030
TU1289872 lncRNA downstream 49806 99917674 ~ 99919868 (-) False G1133026
TU1289873 lncRNA downstream 49806 99917793 ~ 99919868 (-) True G1133026
TU1289856 lncRNA downstream 83455 99886000 ~ 99886219 (-) True G1133012
TU1289853 lncRNA downstream 85756 99882572 ~ 99883918 (-) True G1133009
TU1289893 lncRNA upstream 3644 99989549 ~ 99990363 (-) True G1133042
TU1289896 lncRNA upstream 5675 99991580 ~ 99991845 (-) True G1133043
TU1289897 lncRNA upstream 9178 99995083 ~ 99995357 (-) True G1133044
TU1289899 lncRNA upstream 15508 100001413 ~ 100002086 (-) True G1133046
TU1289900 lncRNA upstream 19447 100005352 ~ 100005569 (-) True G1133047
XR_005035275.1 mRNA downstream 1211 99966423 ~ 99968463 (-) True LOC118937866
XM_036939601.1 mRNA downstream 4427 99946736 ~ 99965247 (-) True LOC110539071
XR_005035282.1 mRNA downstream 112418 99850156 ~ 99857256 (-) False LOC110538873
XM_036939642.1 mRNA downstream 297036 99639639 ~ 99672638 (-) True LOC110485298
XM_036939577.1 mRNA downstream 338601 99563732 ~ 99631073 (-) False LOC118937841
XM_036939630.1 mRNA upstream 272325 100258230 ~ 100295591 (-) False LOC118937853
XM_036939635.1 mRNA upstream 448346 100434251 ~ 100462726 (-) True carhsp1
XM_036939627.1 mRNA upstream 487649 100473554 ~ 100499497 (-) True nat15
XR_005035283.1 mRNA upstream 504750 100490655 ~ 100491915 (-) False LOC118937869
XR_005035284.1 mRNA upstream 504779 100490684 ~ 100491915 (-) False LOC118937869
TU1289875 other downstream 44548 99924060 ~ 99925126 (-) False G1133028
TU1289877 other downstream 45022 99924060 ~ 99924652 (-) True G1133028
TU1289697 other downstream 122688 99840439 ~ 99846986 (-) False LOC110539068
TU1289696 other downstream 126748 99840439 ~ 99842926 (-) False LOC110539068
TU1289296 other downstream 642750 99326512 ~ 99326924 (-) True G1132625
TU1291316 other upstream 224552 100210457 ~ 100211148 (-) True G1134054
TU1291344 other upstream 272749 100258654 ~ 100295566 (-) True LOC118937853
TU1291428 other upstream 435052 100420957 ~ 100423066 (-) True G1134117
TU1291514 other upstream 517700 100503605 ~ 100504088 (-) True G1134183
TU1291403 other upstream 548945 100534850 ~ 100543369 (-) False eci1

Expression Profile