RNA id: XM_036939596.1


Basic Information

Item Value
RNA id XM_036939596.1
length 2730
RNA type mRNA
GC content 0.56
exon number 5
gene id LOC110538862
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100674727 ~ 100688312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCATCCCTGCACTGccccatccctcttctctctccttcacctctaTTAGTTATCCTCGGTAGTTCTCAGAGTTAACAACCTCCGCACCTCTAGACACCCAGACCCCGGCCCGGCCCTGCCCTAACCCAGCCACGCTGCACTATGACCAGCCTCAGAGCCGGACGGAGGGCCCTGGCCCTGGTTCTCCTGGTTGTCCTCCAGCTTCAGGCCTGTAGGGGACAGGGGACTGCTGAGCTCAGGAAGCCCATCTACCAGAGACTCAGACGACTTGACGATCAGTTCCGTCGATTCCAGGAACAGACCCTGAGCCGGTTAGACCTTCTGAACCGTATGTCTAATGTGTCGACCTCCCTAGTAGAGGTCAGAGTTCAGACCCTGTCTGACCAACACAGAAACCTCACCCAGGAACTAACACAACTCAGAGACACCACCACACAGGAGCTGGACGTCCTGAAAGACCAGAGCAGTAAACTACAGAAGAAGAACAAGAGGATGGAGGGAAGACTGGCCTCGCTGGAGAGAGGactgagacacagacagggacagggCAGCAGGCAGACCCAGAGACTGAGTCAGGAGCAGGAAGAGTCTCTCTCCAGCCTCACCCTGGAGCTCCACAGCCAGGAGGGGCGACTCGACTCCCTGGAGGCCCAGCGAGAGGAGCTTCTGGTCGGGCTGAGAGGTCTCCAGGAGTCCCTGAGGGAGCAAGATCTCCGGATGAGCCGGCTCGAATTGAGGCTGGGGGAGCTTTTACAGGGGAATGTAATCTCTTCCAGGGGATCAGAAAGGACAGGAAACACCCTCACCTCCAACCTCACCCCCCAGGACACAGCACCCCCACGGAGGACCCAGGCCTCCAGAGGACAGAGCCCAAGACAGGACACCCAGACATATTACCAGCCCCAGCCTCAGGCTAACATTCAGCCTCAGCCCTACTCTCAGCCCCATCCCCAACCCCATTCCCAGCCAAAACACACAAAAGAAAGGAGGATGAGGACAAGACTACAGGCTCCACCTCCCCACCCCACACAGCCTCCTTCTCAGTcccaggaggagaggaagaggctgggggagagaggacaggagagcccCCGGCCTGGTCTTCCTCAACAGGGGCCAAAACCACAGTCTGTGGAGGAaacgagagaggagggagagatggagaggaggaggggggatgaggtgtggaggaggagtgAAGTGACGCAGacagagatgaggaggggagaggaagagcggacagagaggaggagaggagaggaagagcggacagagaggaggaaggaagaggaagagcggacagagaggaggaaggaagaggaagagcagacagagaggaggaaggaagaggaggaaatgaaAGGAGAGGAATCACAAATCCAGAACCTTCTCCAGCTTCCAGTGAGACACAAGATCCCTCTGCAGCACATCCCCAGGAGAGAAGCTACCATCTGTAACGTGGACTCCATGCTCCTGTTCCCGTCAGCTTCCTCTGAGAACCACGTCACCTTCTCCCGGAGCTTCCCTGCTCTTCCAGAACTCTCCGTGTGCCTGTGGCTCCGCGTCGACGTCGGGTACGTAGGAACGCTCCTCTCTTACGCCACGGAAGACAACGACAACAAACTAGTCCTATACGGAcgcaactcctcctcctcctctttctccaccCCCAGCCGAGCAACCCTGGACTTTGTGGTGGGAGACCCTGCGTACCGTGAGCTCCCTGTGGACTCTGTGCTGGACGGGTGCTGGCACCACCTCTGTGTCCTCTGGTCCTCTATCCAGGGACGATTCTGGCACTACACCGACCGGCGCCTGACCTCCGCAGGGTCACGGTTCAGGAAGGGTTACGAGGTGCCGGGAGGGGGGATAGTGGTGCTGGGAGCAGAGCAGGACAGCCAGGGGGGAGGGTTTGATCCCACCGAGGGGTTCGTGGGGCGCCTGGCGGGGTTCACCGTGTGGGACAGGGTGTTGAGTCCTGGGGAGGTGACAGGGGTGGCTATGGGGAGGGGGGTACCCCGGGGGGTGGTGCTCGAGTTGGGGGACGTTGACAGAGTTCATGGGGAGGTGCAGCAGGTAGCCTGCGAGTGCCTGGAACACTGTAGCTGAGACGTCTGATTCCAAACCGACCCTAACCCCTCGTCCCTCGtccctcatccctcatccctcgtccctcatccctcatccctcgTCCCTCATCCCTCGTCCCTCACCCCTCGTCCCTCATCCCTCGTCCCTCGTCCCTCATCCCTCTTCCCTATAGGCACTCCTAGATCTACGGTGCGGTCCTTTAGGGCAGAGTGGGGCTGGTTTTTACTCCTCTGTACTTGATTGATCAATTAAGGTAATTGatttcccctcacctggttgtctaggttttAATTGTGCatcaattaaaaataaataataacaaataacaaCAACCAGCCTGGAGGGGTTTGACTTGGGATTCAGCTGTCTAAATGTTTTAATATCAATCAATTAACTTCCAGGGAGAATGAAGACCGGCAGAACTGCCCTTCGGACTGGATGTGGACCTGGGTTAAAAGAGGAACACTTCAAAATGATGCATGTGAATGAAAGCCATCAATTATTACTTAAAGCAATGTTGTTATATGGCTAAACAAAGACTATTTCACATCATATATATTGTTACCcagcaacagacagagagacagacttacagacagacagacaggtacagacttagacagagagagagacagac

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1290262 lncRNA upstream 19819 100654690 ~ 100654908 (+) True G1133291
TU1290256 lncRNA upstream 26572 100647089 ~ 100648155 (+) True G1133285
TU1290252 lncRNA upstream 28382 100645153 ~ 100646345 (+) True G1133283
TU1290250 lncRNA upstream 30019 100643975 ~ 100644708 (+) True G1133282
TU1290213 lncRNA upstream 43309 100628020 ~ 100631418 (+) False G1133263
TU1290282 lncRNA downstream 40787 100729099 ~ 100729613 (+) True G1133311
TU1290239 lncRNA downstream 41726 100730038 ~ 100731283 (+) True G1133273
TU1290234 lncRNA downstream 62813 100751125 ~ 100751557 (+) True G1133268
TU1290238 lncRNA downstream 67495 100755807 ~ 100756262 (+) True G1133272
TU1290285 lncRNA downstream 69944 100758256 ~ 100758551 (+) True G1133314
XM_036939574.1 mRNA upstream 50545 100562638 ~ 100624182 (+) False LOC110539066
XM_036939575.1 mRNA upstream 51111 100562466 ~ 100623616 (+) False LOC110539066
XR_005035280.1 mRNA upstream 145378 100521665 ~ 100529349 (+) False LOC110539064
XR_005035279.1 mRNA upstream 145378 100522496 ~ 100529349 (+) False LOC110539064
XR_005035277.1 mRNA upstream 145378 100523922 ~ 100529349 (+) False LOC110539064
XM_036939586.1 mRNA downstream 947 100689259 ~ 100749699 (+) True LOC110538858
XM_036939626.1 mRNA downstream 76800 100765112 ~ 100809399 (+) False LOC118937852
XM_036939625.1 mRNA downstream 89619 100777931 ~ 100809399 (+) False LOC118937852
XM_036939624.1 mRNA downstream 104288 100792600 ~ 100809399 (+) False LOC118937852
XR_005035268.1 mRNA downstream 104288 100792600 ~ 100809399 (+) False LOC118937852
TU1290216 other upstream 43309 100628440 ~ 100631418 (+) True G1133263
TU1289939 other upstream 95944 100562640 ~ 100578783 (+) True LOC110539066
TU1290141 other upstream 156372 100504433 ~ 100518355 (+) False LOC110515889
TU1290142 other upstream 156372 100507152 ~ 100518355 (+) True LOC110515889
TU1290140 other upstream 173282 100501117 ~ 100501445 (+) True G1133219
TU1290299 other downstream 111230 100799542 ~ 100801010 (+) True G1133325
TU1290344 other downstream 461975 101150287 ~ 101154319 (+) True G1133359
TU1290539 other downstream 468681 101156993 ~ 101170260 (+) False G1133510
TU1290765 other downstream 1003115 101691427 ~ 101691975 (+) True G1133665
TU1290391 other downstream 1246905 101935217 ~ 101938656 (+) True G1133406

Expression Profile

XM_036939596.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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XM_036939596.1 Expression in each Bioproject

Bar chart with 17 bars.
XM_036939596.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.