RNA id: TU1178794


Basic Information

Item Value
RNA id TU1178794
length 590
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1034610
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 8225918 ~ 8226507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctgaggtcttggctgatttatttagattttcccatgatgtcaagcaaagaggcactgattttgatggtaggccttgaaatacatccacaggtacacctccaattgactcaaattatatcaattagcctatcagaagcttctaaagccataacataattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtcaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaattgcttgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagaaatttgtggagtggttgaaaaacgagttttaatgactccaacctaagtgtatgtaaacttccgacttcaactgtacgtctcGTTTCAgcagttgaattgcgactctactttgtctctatactgacgcttagcttgtttgattgccttgtggagggaataactacactgtttgtattcggtcatgtttccagtcgccttgccatgattaaatgaaTCACTGATCACAATGAAATATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1178798 lncRNA downstream 101762 8123281 ~ 8124156 (-) True G1034614
TU1178735 lncRNA downstream 125559 8099689 ~ 8100359 (-) True G1034561
TU1178767 lncRNA downstream 151978 8073670 ~ 8073940 (-) True G1034592
TU1178740 lncRNA downstream 186328 8039255 ~ 8039590 (-) True G1034566
TU1178738 lncRNA downstream 191687 8033937 ~ 8034231 (-) True G1034564
TU1178830 lncRNA upstream 4769 8231276 ~ 8232542 (-) True G1034644
TU1178836 lncRNA upstream 17156 8243663 ~ 8244337 (-) True G1034649
TU1178845 lncRNA upstream 29285 8255792 ~ 8257078 (-) True G1034655
TU1178843 lncRNA upstream 29719 8256226 ~ 8256848 (-) True G1034654
TU1178685 lncRNA upstream 80520 8307027 ~ 8307650 (-) True G1034522
XM_036936811.1 mRNA downstream 20525 8127848 ~ 8205393 (-) True LOC110536914
XM_036936810.1 mRNA downstream 20526 8127848 ~ 8205392 (-) False LOC110536914
XM_036936812.1 mRNA downstream 26478 8127848 ~ 8199440 (-) False LOC110536914
XM_021622585.2 mRNA downstream 244715 7978843 ~ 7981203 (-) True LOC110536909
XM_021622583.2 mRNA downstream 325003 7899626 ~ 7900915 (-) False LOC101268972
NM_001124579.2 mRNA upstream 19503 8246010 ~ 8252914 (-) True LOC100136343
XR_005034853.1 mRNA upstream 52034 8278541 ~ 8288538 (-) True LOC118937621
XM_036936816.1 mRNA upstream 65044 8291551 ~ 8460670 (-) False ptpn13
XM_036936814.1 mRNA upstream 65044 8291551 ~ 8460671 (-) False ptpn13
XM_036936815.1 mRNA upstream 65044 8291551 ~ 8460671 (-) True ptpn13
TU1178568 other downstream 391340 7827880 ~ 7834578 (-) True G1034443
TU1178484 other downstream 443880 7721252 ~ 7782038 (-) True LOC110523118
TU1176586 other downstream 2025584 6197017 ~ 6200334 (-) True G1032941
TU1175815 other downstream 2442554 5782940 ~ 5783364 (-) True G1032314
TU1175654 other downstream 2681410 5538381 ~ 5544508 (-) True LOC110536877
TU1178862 other upstream 52832 8279339 ~ 8279866 (-) True G1034667
TU1179454 other upstream 609749 8836256 ~ 8838834 (-) True G1035160
TU1179584 other upstream 792000 9018507 ~ 9042680 (-) False hcn1
TU1179583 other upstream 811080 9037587 ~ 9042680 (-) False hcn1
TU1179591 other upstream 811080 9037587 ~ 9042680 (-) False hcn1

Expression Profile