RNA id: TU1180145


Basic Information

Item Value
RNA id TU1180145
length 1898
RNA type TUCP
GC content 0.43
exon number 3
gene id G1035717
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9533500 ~ 9548135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTCATTGGCTTCTGCATGAACATGTATAATTCTAACAGCACAACATAACCTTACATTTAATATACATATGTTTTAGAGTAATCCAATATCCTTAACATTAGTACTCCAGTGTGTCAGTCAATGTTAATGTACAGTTTGTTTAATTATGGAATAAAgactatatattttatttaaatgaTGGACTGTGCAAAACCGCAAGAATTTATCTCTTACAGGCGTGTTTTATGCTCGTTGTTTTGGATAAACATTGATAGAGGTGATTTGTCAAAGATGTACtattgtgtgtgtggaggaggataTGCAACAGAATGCATTTTGCAACTGTCCAAAATACTGTCAGTTGAAAAAAAAGTGTAAAAGAAGTGGCCATCATGAGGTGCCATCATTTCCTAATTAACAGATGAAACATGGAGAATAACACAAATTGGGGAGAAACAATCTAAAACAGCATtcattcacacacatacaaaaaaaaTACGTACTTTTACAAGTTAAACAAACAGCAAATTACAGGGAGACTTCAAAACATAAACCGATTCACACAAGAAGTTGTTTGGGAAATTAACTTCCATTTCAGTAAAGACCTGCTACCATTGGATGTCGCCAAGCAGATTTCACAGCTTTGATCATtgatagggggagatagaggactctcttagacctgggttcaaatagtatctgTTTTCTTTCAGCTGAGCTTGATTGAGCTTTTATGGAGCCAATGGAATGCTACCAAAAGTGCAAACCAACTCGGCCCGTCCATCTGGCACTCCCCAGACAGGCTCATTCAAAACACTCAAAGGAGACTTTAAAACAGGGGTACTCAAGTACTAGTTGAGAAGGTCCGGTCAAACAAATGTTCTATGTGGCTAAGGTCCAGATGGATAATGTCATTTATCGGCGTAGTAACGAACCCTACCTCACAACCCATTGgaccccaaactgttcacacccctcttgttggcggagagaaaatgttgcagttttaaagctaatttcctgcagttctacacatttcaCATGGGACAGAGAATTTTGTTGCTATttcaaagctaatttcctgcaattctacacatcttATGTGTGTTTAAATGATACCAGGGGTCAAAGCCCGATCGAGTTCCATTATTTTAACAATAAATAGATGTGGTCCACCAGTTGAGCATAGGAGCTTTAAAATAGCTCAGATACTTATTTTAAACCCAGGTCTGCTGGGTGGAGAGTGGAGATTCTTATAGGATCGGTTTGTTTACAGTCGGTCCTAAAtcactccctttccctcccccttgTTCCCTTACACCTCTATGTTAGCATGTCTAATGGTCTTAATAAGTATAGGCAGTGTGGTGGTACAGCTTCCACCATGTTTTTCCACCTTCAGATCTGCAAACATTGAAGGGTTAGGGCCAAGGGATCGAATCGGGCTAGAATTGGGACCGGCTGTTCATGAAGTGAAATCttccattttatttttattttacatgaCAGAGCATTTCTCCTCTGCCTTGGCTTTCATCTCCGTCACGGTGGCCGAGGCCTTCTCCTTGAGCTGGTCCATGTCCATGTTCTGGAGGTTCTGAATGCCACCCAAGATGGAgtccttgtcctcctcctccgTGGCATCCTCGTCCACCATCTTGAGCAGCTCCTCGGGTACGTCCACGTCGTCTCCAGCCATGGCCAGCATGTTATCGTCCTGCTCGCTCTTTGGGAGTCTGTACTTGTCTCGTAGGCACACCCGCAGAGTTGCCCTCTCAGCTTTCTTGTGTAAGAAGTCGGCATCTCTTTCCATCTTCTCCTCCACCAACTGTTTTTGGTACTCCTCATACTCCTCGCGTGTCATCCCTGCTGCCTTGGCCGGGTCTGCAGGGGCCGCCTccgcttcctcctctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1180118 lncRNA downstream 44363 9488917 ~ 9489137 (-) True G1035690
TU1180116 lncRNA downstream 46485 9486737 ~ 9487015 (-) True G1035688
TU1180115 lncRNA downstream 47035 9486158 ~ 9486465 (-) True G1035687
TU1180114 lncRNA downstream 48129 9485130 ~ 9485371 (-) True G1035686
TU1180013 lncRNA downstream 68030 9460518 ~ 9465470 (-) True G1035594
TU1180167 lncRNA upstream 19497 9567632 ~ 9568010 (-) True G1035736
TU1180353 lncRNA upstream 109049 9657184 ~ 9667930 (-) True G1035881
TU1180325 lncRNA upstream 136699 9684834 ~ 9696461 (-) False LOC110536932
TU1180321 lncRNA upstream 138150 9686285 ~ 9689014 (-) False LOC110536932
TU1180382 lncRNA upstream 167167 9715302 ~ 9715589 (-) True G1035907
XR_005034825.1 mRNA downstream 327083 9037636 ~ 9206417 (-) False hcn1
XR_005034826.1 mRNA downstream 327083 9037636 ~ 9206417 (-) False hcn1
NM_001124318.1 mRNA downstream 327083 9043077 ~ 9206417 (-) False hcn1
XR_005034854.1 mRNA downstream 511278 9015996 ~ 9022222 (-) True LOC110536920
XM_021622597.2 mRNA downstream 673433 8857631 ~ 8860067 (-) True esm1
XM_036936840.1 mRNA upstream 13968 9562103 ~ 9563516 (-) False LOC110536926
XM_021622605.2 mRNA upstream 13968 9562103 ~ 9564000 (-) True LOC110536926
XR_002475525.2 mRNA upstream 138154 9686289 ~ 9689055 (-) False LOC110536932
XM_036936859.1 mRNA upstream 146947 9695082 ~ 9750067 (-) False nedd4l
XM_036936860.1 mRNA upstream 146947 9695082 ~ 9750067 (-) False nedd4l
TU1179584 other downstream 490820 9018507 ~ 9042680 (-) False hcn1
TU1179583 other downstream 490820 9037587 ~ 9042680 (-) False hcn1
TU1179591 other downstream 490820 9037587 ~ 9042680 (-) False hcn1
TU1179610 other downstream 490820 9037587 ~ 9042680 (-) False hcn1
TU1179624 other downstream 490820 9037587 ~ 9042680 (-) False hcn1
TU1180323 other upstream 137894 9686029 ~ 9689042 (-) False LOC110536932
TU1180320 other upstream 138150 9686285 ~ 9689042 (-) False LOC110536932
TU1180324 other upstream 138150 9686285 ~ 9689042 (-) True LOC110536932
TU1181316 other upstream 357169 9905304 ~ 9909831 (-) False sema4d
TU1181319 other upstream 357169 9905304 ~ 9909831 (-) False sema4d

Expression Profile