RNA id: TU1181305


Basic Information

Item Value
RNA id TU1181305
length 1191
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G1036674
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9869880 ~ 9876285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGGCTTTATTTCAGATTTTGACCCAAAGTTTGTCCATGGCCCTCTCACTGGCAGTATGTGGGCAGGTGTACCATGGTTTTATTGGACTAGTTTCCTTTCCTGAGGTTAAAAGTGAATATATTCACAGTTAAGACTAatcaataacatttttttttaaataaacacattttaaacCTACAACAAAATTAGTTccagtacagagacaaacaggTGTCAGTAAATCTTCACATAAACAGTTTTTCCCTCTAGGTTTTCTACATATGATTACAATCAACTCATTTGTGTGCCTCAAAAGTTACATGTAGTCATTTTGAACATTATACAACAGGTGAGTCTAATCCTGATTGGTTATAActgcattccagccagtgtctacaTGTAGTCAATTTGAACATTATACAACAGGTGAGTCTAAtcctgattggttaaaactgcattccagccagtgtctacaTGTAGTCAATTTGAACATTATACAACGGGTGAGTCTAATCCTGAAcactgattggttaaaactgcattccagccagtgtctacaTGTCGTCAATTTGAACAACAGAAAGCATGGTACCATATCTAAATCTGATTAAGGCTCATCTCCAGTGGACTGACACCCCAacgctagcctggtcccagatctgttggtgctgtAAAACCCAACTCCTATGATCGTGGTGATGCAAGACAAAACAGACCTGGGTCCAGGCTACCTCAAACGCCATCTTCGTGCATGTTGTACGTAGGGCTCTTGAGCGTTGATGTCTCGCATCGTGTGGGAGAGATGAGGGTACTCTAGCGTCTTTCATTTGCACATGCATGAATGGTGATTGAAGTGCCTGTCTTTTTCTCAATTGCCTAAAATCTGTACTCCTCCTTTGATCTATCTGAAAGAAGTGACCGGGTGAAAGCCAGGCCTAATGATGATCTTCCATGTAGTTGTGTAAAGCCTGGTTAAACACAGCCAAGAAGAAGTCTGCATCGTCCCTGGTGATACACATAGGGGGCTTGATCCGGAACGTCTGTCCATACACTCCTCCCTTCCCAATCAGAACACCCATGTCTTTGGTGTCTTCGAAAATCTCGCTCATGGCTGCTGGTGGGAGAGGTTTGCGGCTCgcCTTATCTTTCACCATCTCCACTCCAATCTGCAGTCCCTTCCCTCGGACATCCCCAATGATCTCATACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1181300 lncRNA downstream 5143 9864274 ~ 9864737 (-) True G1036670
TU1181293 lncRNA downstream 14853 9846631 ~ 9855027 (-) True G1036664
TU1181280 lncRNA downstream 32104 9835310 ~ 9837776 (-) False G1036657
TU1181281 lncRNA downstream 34251 9835310 ~ 9835629 (-) True G1036657
TU1181278 lncRNA downstream 35602 9833650 ~ 9834278 (-) True G1036655
TU1181362 lncRNA upstream 113022 9989307 ~ 9995499 (-) True zgc:86839
TU1181388 lncRNA upstream 161476 10037761 ~ 10040455 (-) True G1036735
TU1181392 lncRNA upstream 168543 10044828 ~ 10045288 (-) True G1036739
TU1181408 lncRNA upstream 200723 10077008 ~ 10080380 (-) True G1036753
TU1181409 lncRNA upstream 205902 10082187 ~ 10083031 (-) True G1036754
XM_036936855.1 mRNA downstream 66344 9695082 ~ 9803536 (-) False nedd4l
XM_036936856.1 mRNA downstream 66344 9695082 ~ 9803536 (-) False nedd4l
XM_036936857.1 mRNA downstream 66344 9695082 ~ 9803536 (-) False nedd4l
XM_036936858.1 mRNA downstream 66344 9695082 ~ 9803536 (-) True nedd4l
XM_036936854.1 mRNA downstream 104780 9695082 ~ 9765100 (-) False nedd4l
XM_036936861.1 mRNA upstream 245 9876530 ~ 9887383 (-) True dnajc21
XM_021622614.2 mRNA upstream 15318 9891603 ~ 9896872 (-) False bxdc2
XM_021622615.2 mRNA upstream 15318 9891603 ~ 9896872 (-) True bxdc2
XM_021622617.2 mRNA upstream 20743 9897028 ~ 9899621 (-) True rad1
XM_036936871.1 mRNA upstream 24824 9901109 ~ 9972778 (-) False sema4d
TU1180323 other downstream 180838 9686029 ~ 9689042 (-) False LOC110536932
TU1180320 other downstream 180838 9686285 ~ 9689042 (-) False LOC110536932
TU1180324 other downstream 180838 9686285 ~ 9689042 (-) True LOC110536932
TU1180145 other downstream 321745 9533500 ~ 9548135 (-) False G1035717
TU1179630 other downstream 827200 9037587 ~ 9042680 (-) True hcn1
TU1181316 other upstream 29019 9905304 ~ 9909831 (-) False sema4d
TU1181319 other upstream 29019 9905304 ~ 9909831 (-) False sema4d
TU1181323 other upstream 29019 9905304 ~ 9909831 (-) False sema4d
TU1181325 other upstream 29019 9905304 ~ 9909831 (-) False sema4d
TU1181327 other upstream 29019 9905304 ~ 9909831 (-) True sema4d

Expression Profile