RNA id: TCONS_00003980


Basic Information

Item Value
RNA id TCONS_00003980
length 5871
lncRNA type lincRNA
GC content 0.45
exon number 2
gene id XLOC_002056
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19583289 ~ 19589733 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTAACTGAATGGCTGAAGGCCTATAAAAAACACTTACCGCcaacatttttcattattttgtttgtgGGTTCTGTATGGAGGTTTGGAACAATAAGCAGTCAGTGTTTGGATTTGTTGTTTGATTTTATAAGGCCATGGATCAAGGGTGGATAAGGTGAGTTTTACTAGTCACGCTGTTAGTATTTTGTTTTGCAAATgttgttcaatttttttttatgtaatgtgtCTTTCAACTTGTAGGTTCCCCTTGTTGGTAGTCGTCCTGCTTTTTTGGATGAATGCTGATGGATATTCATATTCAACTTCTCCAAATGCTGACCAATGGTTGGGTCAGCCATCTGAGAAAACTTTCTTGCCTCTGGTCGTCCAGTCTTCTGTGGCAGAAGCCCCTGTTACTGGGGTTTTGCTCGAAGAAGTGGTCTCTAGTTTGCCAAAAAACAGACCCAAGTTTAATCTACTTCAGGTTGTTAAAGGTGGTGTTTCCAGCAGTTCTGACTCTACACCCCAAACTCTATCTCTAAATACCCCCTCCTCAGCTTCTCTGCCTGTGGATCAATCTGGTAAAAGTGGTTCAGTGTCATTTAAGGGCTCATCTGGATCCACCACTGCATATGCTACAAGTGGTTCTGGACAAATTGTTTTTGCGCAAAGGGAAAGTGGCAGCTTTTCTTCCAACGCTGGAGTTTCTGGCCAGTCCACTAATGACCAGAGCTCCCCTAGTCTGTCTAGTTCAGCTTCTCAAGGTACCACATATGGATTAACTTCCCTGGTTCAAGGTACAAATCAGTTTGCTCCAGGATCTTCATCCTCTTATGCAACCATATCATTGCCCAAATATGTTAGCCAGTTGAAAACTGGACCAAGTTCAAAGCCATTTATGACTGTCTATGGCACCCAGACTTTGCAAGGAAGTACCACATATGGTGGAAAAATTCAGACTACAGATACCGCAAGTCAGTTCGTTAAAGGATCTACATCTCCAGATGTAGTAATATCCTTGTCCCAAGATGTTTCTAGTCAGTCAGCTGTGCCCAGTTCAAAGCAGATTACCTCGGTCTATAGCACTCAGACTGGATCCTCTGCTCCTTTTACTCTGCAAGAACTATTCCAGGGTCAAGATTCAACAAGCAAGTTTGTTTCAGGATCTTTAACCCCATCTGTAGCTGTATCATTGGCCCAAGGTGTTTCTAGCCAGTCAGCTTTACCAAGTTCAAAGCGTATAACCTCTGTCTATAGCACCCAGACAGGATCCTCTGCCCCTTTCACTTTGCAGAGATTAGTCCAAGCTCCAGATATGAGCACTGTGATTTCAGGATCTTTAACCCCATCCGAAGCTATATTATCGGCCCAAGGTGTTCCTAGCTATTCAACTGTGCCAAGTTCAAAGAAGACCATTACATCCGACTTCAGCACTCAAACCGGATCCTCTGCTCCTTTCACTTTCCAAGAAAGCACCACTTATGGTGGACTCATCCAGGCTCAAGATACAAGTCAGTCTGTTTTGGGATCATCAACCCCTTATGTTGCTGTGTCCATACCCCAAGTCGTTACTAGTCAATCAGCTATGCCAAGTTCAAAGCAGACAACCTCTGTCTATAGCACTCAGACAGGATCTTCTGCTCCTTTCACTCTGCAAGAACTACTCCAGGGTCAAGATTCAACAAGCAAGGTTGATTCCGTATCTTCAACCCCTTTTGTCTCTGTATCATTGCCCCAAGTTTTTACAAGTCAGTCAGCTACTGTGCCAAGTCCCAAGAAGCCAATTACCTCTGTCTATAGCACCCACAGACTAGTCCAGGCTCCAGGTGTACCCCACAAGGTTGTTTCAGGATCCTTAACCCCATCTGTAGCTGTATCGTTGACACAAGGTGTTCCTAGCCAGTCCACTGTACCAAGTTCAAAGAAAACCATTACCTCAGTCTATAGCTCTCAAAAAGGATCCTCTGCCCCTTTTACTTTGCAGAGACTAGTCCAAGCTCCAGATACAACAAGCACCGTGATTTCAGAATCTTTAACCCCATCTAAAGCCATATTATTGACCCAAGGTGTTCCTAGCCAGTCAGCTGTTCCAAGTTCAAAGACTATTACCTCAGTCTATAGCACTCAAACAGGATCCTCTGCCCCTTTCACTTTGCAGAGGTTAGTCCAAGCTCCAGATACAAGCACTGTGATTTCAGGATCCCTAACCCCATCTGAAACCATATTATTGGCCCAAGGTGTTCCTAGGCAGTCGGCTGTGCCAAGTTCAAAGAAGACCATTACCTCAGTCCACAGCACTCAAACAGGATCCTCTGCTCCTTTCACTTTCCAAGAAATCACTGCTAATGGTGGACTGATCCAGGCTCAAGATACAAGTCAGTCTGTTTTGGGAATATCAACCCCTTATGTAGCTGTGTCCATACCCCAAGTCATTACTAGTCAATCAGCTGTTCCAAGTTCAAAGCAGACAACCTCTGTCTATAGCACTCAGACAGGATCTTCTGCTCCTTTCACTCTGCAAGAACTACTCCAGGGTCAAGATTCAACAAGCAAGGTTGATTCAGTATCTTCAACCCCTTTTGTCTCTGTATCATTGCCCCAAGTTTTTACAAGTCAGTCAGCTACTGTGCCAAATTCCAAGAAGCCAATTACCTCTGTCTTGGGCACCCACAGATTAGTCCAGGCTCCAGATGTACTTCACAAGGTTGTTTCGGGATCCTTAACCCCATCTGTAGCAGTATCATTGGCCCAAGTTGTTCCTAGCCAGTCAGCTGTGCCAAGTTCAAAGAAGACCATTACCTCAGTCTACAGCACTCAAACAGGATCCTCTGCCCCTTTCACTTTGCAGAGGTTAGTCCAAGCTCCAGATACAACAAGCACTGTGATTTCAGGATCTTTAACCCCATCTGAAACCATATTATTGGCCCAAGGTGTTCCTAGCCAGTCAGCTGTTCCAAGTTCAAAGAAGACTATTACCTCAGTCTACAGCACTCAAACAGGATCCTCTGCTCCTTTCACTCTGCAAGAACTTTTCCAGGGTCAAGATTCAACAAGCAAGGTTGTTTCAGGATCCTTAACCCCCTCTGTAGACGTATCATTGGCCCAAGTTGTTCCTAGCCAGTCAGCTGTGCCAAGTTCAAAGAAGACCATTACCTCAGTCTATAGCACTCAAACAGGATCCTCTGCCCCTTTCACTTTGCAGAGGTTAGTCCAAGCTCCAGATACAACAAGCACTGTGATTTCAGGATCTTTAACCCCATCTGAAACCATATTATTGGCCCAAGGTGTTCCTAGCCAGTCAGCTGTTCCAAGTTCAAAGAAGACTATTACCTCAGTCTACAGCACTCAAACAGGATCCTCTGCTCCTTTCACTCTGCAAGAACTTTTCCAGGGTCAAGATTCAACAAGCAAGGTTGTTTCAGGATCCTTAACCCCCTCTGTAGACGTATCATTGGCCCAAGTTGTTCCTAGCCAGTCAGCTGTGCCAAGTTCAAAGAAGACCATTACCTCAGTCTATAGCACTCAAACAGGATCCTCTGCCCCTTTCACTTTGCAGAGGTTTGTCCAAGCTCCAGATACAACAAGCACTGTGATTTCAGGATCCTTAACCCCATCTGAAACCATATTATTGGCCCAAGGTGTTCCTAGCCAGTCAACTGTTCCAAGTTCAAAGAAGACTATTACCTCAGTCCATAGCACCCAAACAGGATCCTCTGCTCCTATCACTTTCCAAGAAAGCACCACTTATGGTGGAACGATCCAGGCTCAAGGTACAAGCCAGTCTGTTTCGGGATCATCAACCCCCTTTGTAGCTGTGTCCATGCCCCAAGGTGTTACTAGTCAATCAGCTGtgccaagttcaaagcaaattacCTCTGTCTATAGCACCCAGATAGGATCGTCTGCCCCTTTCACTTTGCAGAGTATAGTCAAGGCTCAAGATACAAGCAAGGTTATTTCAGAATTTTCAGCCCCATCTGTTGCTGTAGCACTAGCCCAAGCTGTTCCTAGCCAGTCAGCTGTACCAAGTTCAAAGCAGATTACCTCTGTCTTTAAGACTCAACAAGGATCCTCTGCTCCGTTCACTTTCCAAGGAGGCACCACATATGGCGTACCGATTCAGGCTCAAGATACAACAAGCCAGTTTGTTTCACGATCTTCAACCCCTGTTGTAGCTGTGTCATTGCCCCAAGATGTTGTTAGTCCATCAATAACTGTGCCAAGTTCAAAGAAGCCCATTACCTCCGTTTATGGCACTCTGACTGGGTCTTCTGCTCTCTTCACTTTGCAAGGTCTACTCCAGGGTAAGGAATCAACAAGCCAGGTTGTTTCAGTATCTTCCCCCTATGTGGCTGTATCACTGCCCCAAGGTATTACTAGTCAGTCAACAATTGTGCCAAGTTCAAAAAAGACCTTTACCTCCGTCTATGGCACTCAGACAGAGTCCTCTACTCCTTTTGTACTACAAGGAACACTCGAGAGTCAAGATTCAACAAGCCAGGTTGTTTCTGTATCGTCAACCCCATATGTATCTGTGTCCTTGCCCCAAGATGTTACTAGTCAGTCAGCTGTGCCAAGTTCAAAGCGGATAACCTCGGTCTATAGCACCCAGACGGGATCCTCTGCCCCTTTCACTTTGCAGAGACTAGTCCAGGCTCAAGATGCAACAAGCGAGATTGGTTCAGGATCTTCAACTCCATCTGTAGTTGTCACTGGACCAAGGTGTACCAAGTTCAAAGCAGATTACCTCTGTCTATGACACTCAGACAGGATCATCGGCTCCTTTCACCTTGCAAGGAGGCACCGCATATAGTGGACTAACTCAGGCTCTAGATTCAGCAAGCCAGGTTGTTTTAGGATCTTCATCCCCATATGTAGCTGTAGCATTGCCCCAAGTTGTTACTATTCAGTCGACTACTGTGCCAAGTTCAAAGAAGCCATTTGCCTCTGTCTATGGCACTCAGACTGGGTCTTCTGCTCCCCTCGCTTTACAAGGACTACTCCAGGGTCAAGAATCAAGCCAGGTATTTTCAGTATCTTCCCCTTATGTGGCTGTTTCACTGCCTCAAGGTATTACTAGTCAGTCAACAACTGTGCCAAGTTCAAAGCAGATCACCACTGTCTATGGAACTCAGACCAGTTCTTCTGCTCCCCTCACTTTGCAAAGACTATTCCAGGGTCGAGGTTCAACAAGAGTTTCAGGATCTTCTTCCCCATATGTAGCTGTATCATTGCCCCAAGGTGTTAATAGTCAGTCAATGACTGTGCCAATTTCAAAGCAGATCACTTCTTCTGTCTATAGCACCCAAACTGGATCCTCTCCCACTCTGAATGTGCAAGGACTACTCCATCCTCAGGATTCTACTGATCAGTTTACTTTAAGACGTGACTCTGTCAAGGGCTAGGAGACTGTTAAACTGTCATGTTTCAATTTTTGTTTGCAActggtttttaaataaaaatttgaagtCTGGGATGTTTAAGTTGTCTATGGtgcattgtattttaattattggACAAACCTAAAGGTTTAATAGTAAACTGAAGTGTGGTTGAGTAGAAGACGTTTGGCCTGTTTCAGCAAGGAGGTTTGACTAACTCGGAGTTtaaaacttgaactctgagttgatttgcAGAGAGGTTTAGGAACCaggttttcggtttcagaacagctcaTCTGAGTttggtcaatcaactttgagtaaaCCAACTCCAAGGTAAACGCACACACTGACTATAAAAAGTCATTATCAATTgagtaaaaatattattagttaccatttctttctccagctgagcTTGATGTGCTCATGCGACGGTATAGTAAATttgacaatatatttttaaaaaaagcaacaccactgcatcattGAAACAGACTTTTAGCGTG

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0016441 posttranscriptional gene silencing biological_process
GO:0007276 gamete generation biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0032504 multicellular organism reproduction biological_process
GO:0035194 post-transcriptional gene silencing by RNA biological_process
GO:0061980 regulatory RNA binding molecular_function
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function
GO:0035198 miRNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194028

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005702 lncRNA upstream 780854 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00003984 lncRNA downstream 12601 19602334 ~ 19615527 (+) False XLOC_002058
TCONS_00005866 lncRNA downstream 12663 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00005865 lncRNA downstream 12663 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00003985 lncRNA downstream 22495 19612228 ~ 19615527 (+) False XLOC_002058
TCONS_00005867 lncRNA downstream 22509 19612242 ~ 19725594 (+) False XLOC_002058
TCONS_00003979 mRNA upstream 7327 19573791 ~ 19575962 (+) True XLOC_002055
TCONS_00003978 mRNA upstream 12943 19569052 ~ 19570346 (+) True XLOC_002054
TCONS_00003977 mRNA upstream 16815 19554604 ~ 19566474 (+) True XLOC_002053
TCONS_00003974 mRNA upstream 32171 19525839 ~ 19551118 (+) False XLOC_002052
TCONS_00003982 mRNA downstream 5276 19595009 ~ 19598009 (+) False XLOC_002057
TCONS_00003983 mRNA downstream 6481 19596214 ~ 19598009 (+) True XLOC_002057
TCONS_00003986 mRNA downstream 480445 20070178 ~ 20101180 (+) False XLOC_002059
TCONS_00003987 mRNA downstream 480447 20070180 ~ 20101181 (+) False XLOC_002059
TCONS_00003988 mRNA downstream 480464 20070197 ~ 20128254 (+) False XLOC_002059
TCONS_00003965 other upstream 648748 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 686685 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 1332221 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 1693086 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 1862158 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003994 other downstream 631633 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 774696 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00004010 other downstream 1094303 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 1646831 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 1807587 21397320 ~ 21399705 (+) False XLOC_002077

Expression Profile

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