RNA id: TU1181957


Basic Information

Item Value
RNA id TU1181957
length 386
RNA type TUCP
GC content 0.45
exon number 1
gene id G1037217
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 11105935 ~ 11106320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaaaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcaaaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1181955 lncRNA downstream 3370 11102365 ~ 11102565 (-) True G1037215
TU1181944 lncRNA downstream 11335 11089270 ~ 11094600 (-) True G1037206
TU1181940 lncRNA downstream 17934 11087660 ~ 11088001 (-) True G1037205
TU1181887 lncRNA downstream 131066 10974087 ~ 10974869 (-) True G1037156
TU1181855 lncRNA downstream 154198 10951199 ~ 10951737 (-) True G1037141
TU1181964 lncRNA upstream 7469 11113789 ~ 11114826 (-) True G1037224
TU1181975 lncRNA upstream 14288 11120608 ~ 11121030 (-) True G1037235
TU1182005 lncRNA upstream 39999 11146319 ~ 11146599 (-) True G1037260
TU1182006 lncRNA upstream 45010 11151330 ~ 11151553 (-) True G1037261
TU1182018 lncRNA upstream 53878 11160198 ~ 11160397 (-) True G1037273
XM_021622637.2 mRNA downstream 54150 11046648 ~ 11051785 (-) True LOC110536955
XM_036936910.1 mRNA downstream 114360 10969940 ~ 10991575 (-) True LOC110536954
XM_036936908.1 mRNA downstream 114362 10969940 ~ 10991573 (-) False LOC110536954
XM_036936911.1 mRNA downstream 114362 10969940 ~ 10991573 (-) False LOC110536954
XM_036936909.1 mRNA downstream 115407 10969940 ~ 10990528 (-) False LOC110536954
XM_021622638.2 mRNA upstream 106352 11212672 ~ 11231102 (-) False LOC110536956
XM_036936914.1 mRNA upstream 148839 11255159 ~ 11319420 (-) False LOC110536958
XM_036936913.1 mRNA upstream 148839 11255159 ~ 11320075 (-) False LOC110536958
XM_036936916.1 mRNA upstream 148839 11255159 ~ 11320075 (-) False LOC110536958
XM_036936915.1 mRNA upstream 148839 11255159 ~ 11320076 (-) True LOC110536958
TU1181956 other downstream 2487 11103084 ~ 11103448 (-) True G1037216
TU1181812 other downstream 245853 10850202 ~ 10860082 (-) True LOC110536951
TU1181319 other downstream 1196104 9905304 ~ 9909831 (-) False sema4d
TU1182137 other upstream 107631 11213951 ~ 11230832 (-) False LOC110536956
TU1182138 other upstream 107631 11213951 ~ 11230832 (-) True LOC110536956
TU1183218 other upstream 500031 11606351 ~ 11615943 (-) True G1038258
TU1183262 other upstream 560667 11666987 ~ 11738777 (-) True G1038295
TU1183605 other upstream 1183204 12289524 ~ 12290472 (-) False G1038606

Expression Profile