RNA id: TCONS_00003982


Basic Information

Item Value
RNA id TCONS_00003982
length 1924
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_002057
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19595009 ~ 19598009 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATTGGTTTTTGCACAAGAGGAAAGTGACGGCTTCTTTTCCAAGACTGTAGTTTCAGGCCAGTCCACTAATGACCAGAGCTCCCCTAGTCTGTCTAGTTCAGCTTCTCGAGGTACCACCTATGATGTAATTACTCAGGCTCAAGGTACAGGTCAGTTTGCTCCAGGATCTTCATATGCAACCATATCACTGCCCAAATATGCTACTAGTCAATTGATAACTGGACCAAGTTCAAAGCAATTTACCTCCGTCTATGGCACCCAGACAGGATCATCTGCTCCTTTCACTTTGCAAGGTAGTACCACACATGGTGGACCAATCCAGACTCAAGATGCCTCAATTCAGTTAGTTTCAGAAACTTCAACCCCACACATGGCTGTATCATTGTACAAAGGTGTTGCTAGTCAGTCAGCTGTGCCAAGTTCCAAGCAGATTACCTCTGCCTATAGCACTCCTACAGGGTCTTCTGCTCTTTTCACTTTGCAAGGGCTACTCCAGGGTCAAGATTCAAGTCGGGTTGCTTTAGGATCTTCAGCCCCACATGTAGAAGTTTCTTTTCCCCAAATTGTTACTAGTCCGTTGACCTCTCTACCAAGTTCAAAGCAGATTACTTCTGTCTATAGCACCCAGACAGGATCCTCTGCCCCTTTCACTTTGCAAAAAGTAGTCCAGGCTCCAGATGCAACAAGCCAGGTTGTTTCAGGATCATCTTCCCCAAATGTAGTCTTATCATTGCCTCAAGGTGTTACTAGTCAATCAACAACTGTGCAAGGTTCAAAGAAGCCAATTACCTCTGTCTATGGCACTCCAACAGGATCCTCTGCTCTATTCACTTTGCAAGGACCCCTCCGGCATCAAGATTCATCAAATCGGGTTTCAGTATCTTCCCCATATGTGGCTGTATCATTGCCCCAAGCTGTTACTAGTCAGTCAGGTGGGCCAATTTCAAAGCAGATCACCTCTGTTTATAGCACTCAGACTGGATCCTCTGCCCCTTTCACCTTGCAAAGACTTGTCCAGGCTCAGGATTCAACAAACCAGGTGGTTTCAGGATCTTCTCCATATGTAACCGTATCATCGCCTCAAGGTGTTACTAGTCAGTCAACAACTGTGCCAAGTTCAAAGAAGCTAATTGCCTCCATCTATGGCACTCCAACAGGATCCTCTGCTCTTTTCACTTTGCAAGGACCACTCCAGCGTCAAGATTCGTCAAGTCAGGTTGTTTCAGTATCTTCCCCATATGTAGCTGTATCATTGCCCCAAGATGTTAATAGTCCGTTGACTCCTCTGCCAAGTTCAAAACAAATCACCATTGTCTATAGCACTGAGGCTGAAACCTCTGCTCCTTTCACTTTGAAAGAAAGCACAACATATGGGGGACTTCTCCAGGCTCAAGATTCAACAAGCCAGGTTTCAGTATCCTCAACCCCATATGTAGCTGTATCCCTGCCCCAAGGTGTTGCTATTCAGTCAGCTGTGCCAAGTTCAAAGCAGATCACCTCGGTCTTTGGCACCCAGACAGGATCTTCTGCTCCATTCACTTTGCAAGGTAGCACCACATACGGTGGACCTCTCCAGGTTCAGGATGCAGCAAGTAAGGTTGTTTCAGGCTCTTCCCCAAATGTAGCTGTTTCCTTTCCCCAGGATGTGACTAGTCAGTCAGTTGTGCCAAGTTCAAAGCAGATCACCTCGGTCTATGGCACCCAGACAGCATCCTTTGCACCTTTCCGTTGGCAAAGACTACTTCAGACTGAAGATTCTACAGGGCAGTTTTCTCCAGGATCTCCGTCCTCTGTCAAGACCTCAACCTCTTATTTTTCCAAACCTTCCAGTAGCTCTACTATAGGACGCTACAACTCTGTCAAGGGATAAGAGACTGTTAAACTGGCGCTAATGTTTGTTCAACTTTTCCaataaattttgc

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080213-12 No description available

Ensembl:

ensembl_id ENSDART00000112276

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003981 lncRNA upstream 5276 19583289 ~ 19589733 (+) False XLOC_002056
TCONS_00003980 lncRNA upstream 5276 19583289 ~ 19589733 (+) True XLOC_002056
TCONS_00005702 lncRNA upstream 792574 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00003984 lncRNA downstream 4325 19602334 ~ 19615527 (+) False XLOC_002058
TCONS_00005866 lncRNA downstream 4387 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00005865 lncRNA downstream 4387 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00003985 lncRNA downstream 14219 19612228 ~ 19615527 (+) False XLOC_002058
TCONS_00005867 lncRNA downstream 14233 19612242 ~ 19725594 (+) False XLOC_002058
TCONS_00003979 mRNA upstream 19047 19573791 ~ 19575962 (+) True XLOC_002055
TCONS_00003978 mRNA upstream 24663 19569052 ~ 19570346 (+) True XLOC_002054
TCONS_00003977 mRNA upstream 28535 19554604 ~ 19566474 (+) True XLOC_002053
TCONS_00003975 mRNA upstream 43891 19525839 ~ 19551118 (+) False XLOC_002052
TCONS_00003986 mRNA downstream 472169 20070178 ~ 20101180 (+) False XLOC_002059
TCONS_00003987 mRNA downstream 472171 20070180 ~ 20101181 (+) False XLOC_002059
TCONS_00003988 mRNA downstream 472188 20070197 ~ 20128254 (+) False XLOC_002059
TCONS_00003989 mRNA downstream 510548 20108557 ~ 20141343 (+) False XLOC_002059
TCONS_00003990 mRNA downstream 515821 20113830 ~ 20137773 (+) False XLOC_002059
TCONS_00003965 other upstream 660468 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 698405 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 1343941 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 1704806 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 1873878 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003994 other downstream 623357 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 766420 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00004010 other downstream 1086027 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 1638555 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 1799311 21397320 ~ 21399705 (+) False XLOC_002077

Expression Profile

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