RNA id: TU1185711


Basic Information

Item Value
RNA id TU1185711
length 3417
RNA type TUCP
GC content 0.45
exon number 2
gene id G1040432
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 14307600 ~ 14311052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTAATCCCAGATGGATAAAGTGTTCGTCAATCAAGCACTAATTTAGTCACAAAGACAACCAGCAACAATAGAAGTagcaacaacagcaggtagaaaacaacaacatttcAGTCAATAGAATAGAAATAATTAGTTTAGGTTAGATTTAAAGTTTCCAAGAGCAATGTAAACCACGTGTTACACTCTTCATCCACCCCAACCTCCTCTCTGCAGCAGAGAATTCTGCTAGTCTCACTCCAATGTGTCCAGTAATAAGACATTTAACCAGTATGTATATTGACATGAAGTAAAAATAGTATAGGATCAAATACATATCTGATCAGTTGACGTACATGTTATAATGttctactgtatgtctgtttcCTTCTTCGTGTTAGGATCCAGAGTGTCTGACTTGAGGTACTGCCAGGAGTTGCTCCATTCTGCCTGGGGCAGTTCAACCCCGTGGAGTTGCATGTGGTGTTTGGGGCTGTTGTGTATGAGAGGTTCTGTGCCCTGGTTAAGCTGATGTGGGTGATTTGGTTTTGAGAGTCTCCATGATTGTTTCCACCGGTCCAGTGATACTGAGTTGTTGGATTCTGGGGCGACAGATAACCTCCAAGACTCTGCCCAGTCCTCCAactgctgctggtgctgctgtgTCTTCCAAGATTCAGACCATTCATTCTGAGGCATGCTGTTTTCAGCATGATCGACACCCAGGCACTTGTAAGTCTTATGCTTATTGGACAAAAACACAAAATCATTTTGGGCTTTTGTGTTGTTTTTTGACAGATTCGGACAATCAATTTCTTCGAGCTCTGCCTGGGACTGAGGTTGATTTTTCAAAGATTTCCAGGACTCTACCCCTTCTGGTGAGGACATAATGTTTTCATCAAGCTGGGAGATCAACAGATCCTTGAACAGCTTGTGTTTTAGTGATACAGGGAGAAACTGCCGATTCTGGGAGTATATAGAGGCCCTGTATGAGTGATGTTCATGACAAGAACTCCAGGACTCATGCCAATCCTTCAGATATGGATTGTTGTTTTGAACATTGTTACCTGCGACCTTCCAAGATTCTGTCCAACCTGGTAAGAAGCCATCGGGCTGTACTCTTTCTGTAATCATCTTGTTCTCAGTATGCTGCTTGTGTAAAGGCTTGAGTGTCTTCCATGCATCCTCCCACTCCGGAAGGTTTACTTTGTTATCCAAACGCTTAGCATTCAGTAGTTTGTTGCTTTGTTCCCGGCTGAAAGCTGGCCATCCCTGCTGCCAGgatgttgtttgtgtgtgcagtAAGCGACTGAATAGCAGTGGTCGACACTTGAAGGGCTTTGCCCATTCATTGAAAGGTAGGTTTCTGTCCTGCTTAAACACCCTCCACCATTTTTTTCCAGATGGGACTTCCTTCTGTGGGGGCTTCAGGATTTTCCAGGAATCACCCCAGATTGCCTGGTTAAGATTATATTTGTAAGGCTGAGGATATGATGGTGTGCTGGCTTTCAGCATCTTGGGTGAGGTGGGGCTCTCATCCTCTGGCTTGAACCTCCATGATTCTGCCCAATCATTCAAAGGAATCTCTATTAGATGTGACAAATTATTAGAGGATTCAGAATGGCTAtatttttcctcctcctcctcctgtgtcGTAGTGTATTGGGTAGGCTTGATGGTCTTCCAGCATTCAGACCATTCATTCTGGACCATACAGTCAACGCTCAAAAAACATTCAGTCTTATGCCTTGAGAAAAATACAACATCCCTTTGGGGTTTTAAGTCATTTCTATTTAGGTTCGTCCAAGATATCTTCCAGGAATCCGCCCATTTTGTTGAAGGATGTTGTTGTTCATCTTTACCTGCTACAGCTTGCGCAGTTGACACTTTCCAAGACTCATGCCAGTTTGAGAAAGGTGTGTTAAGCTTGTAGAACTGAAAAGGCAGTGGGACATGGGACATTTCCAACACCGATTCAGTTTCTTCTGAATCTGACTGGGACTGAGGATAAGGTTTCACAGATTTCCAGGACACAATCCACTCGTATGAAGATGGGATTTCCTCATCAAGCTGGGAGCTCAACAGCTCATTGGTCAGCAAGCATTTTGACATCATCATAGCATGATGACAGTACTGGAAGTCCATAAAGGACTTGCAACAGTGGTGTTCTTGGCACAAACTCCAGGACTCATGCCAATCATTCCAATATGGATTGCTGTTTTGTTTCCAAGATTCTTTCCAACCTGGCAAGAAAGTATGTTGGGGAGGCATGGGGGTCTTCCAGGATTTAGACCATTCACTCTGAGGCATGCTGTCAACACCCCGGAACCTTTGGGTCTTGTACTTATTTGAGAAAAACACAACATCTCTTTGGGCATTTGTGTCATTTTGATGCTGACTACATATCTTCCAGGAACCTTTCCATCCATCTTCAATTGCTTCATTATTTGCAGTTGACACTTTCCAAGACTTGTGCCAGTTTGAGAAAGGTGTGTTAAGCTTGTGGAACTGGAAATGCAGTGGCACATGGGACATTTCTACCTTTAATTCAGTCCCTTTGGGCTCTGACTCGGACTCTTGGTACTGGAGCTGAGATTTCACAGATTTCCAGGACTCTATCCAATCTGATGAAGATGGGATATCCTCATCAAGCTGAGAGATCAACAACTCATCGGACAACACATGTTTTGACATCAACTGGGAGTCTATGGGGGCCTTGTACCAGTGGTGGTCTTGGCACAAACTCCAGGACTCGTGCCAATCCCTCAGATATCGGCCACTGTTTTGGACATTTTCACCTGCGACCTTCCAAGATTCTGTCCAGCCTGGGAAGAAGGCTTTGAGCCGTACTGTTTCTGTAATCATCTGGTTCTCAATGTGTTGCTTGGATAAAGATTTGGATGTCTTCCAAGCGTCCTCCCACCCTAGAAGGTTTACTTCGACATCCAAAGGCTTAGCTTTCAATAGTTTGATGCTTTGTTCCCAGCTGAACACTGGCCATCCTCGCTGCCACCACTCTGTTTGCTGGTGAAGGATGAAACTGAATAACAGTGGTCGACACTTGAAGGGCCTTGCCCATTCGCTGAGAGGTAGGTATCTATCTGGCTTCAAATCCCTCCACCATTTTTCCTCAGGTTGGACTTCCTGCTCTGGGGGCTTCAGGCTCTTCCATGACTCATCCCAGCCTCCGGCTGGTTTGAGAACTTGGTGCTTTGCCTTCTTGGGTGGTTTCTttttgggtggtggtggtggtggggatggaGCAGGTTTGGGAATCTTTGGTGGTGGTACCACCTTAAACATGGCTCTTTCGATGTCAGCATCAACGTCTGGGATCACCGCAACCTTTCTGAAGTCAGATATGTTGCTGCCCTTTCCCTTCGTCTCCGCTGCCGTAGGGGTTCCATTTGTGTTCGCCAGGCGAGACTGCCACTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1185703 lncRNA downstream 15462 14291934 ~ 14292138 (-) True G1040424
TU1185660 lncRNA downstream 65591 14212095 ~ 14242009 (-) True G1040383
TU1185562 lncRNA downstream 228911 14070953 ~ 14078689 (-) True G1040292
TU1185559 lncRNA downstream 232522 14070953 ~ 14075078 (-) False G1040292
TU1185545 lncRNA downstream 284135 14023034 ~ 14023465 (-) True G1040283
TU1185721 lncRNA upstream 7309 14318361 ~ 14318603 (-) True G1040442
TU1185760 lncRNA upstream 30504 14341556 ~ 14341809 (-) True G1040479
TU1185775 lncRNA upstream 53439 14364491 ~ 14364840 (-) True G1040494
TU1185790 lncRNA upstream 64810 14375862 ~ 14376089 (-) True G1040509
TU1185815 lncRNA upstream 78551 14389603 ~ 14389823 (-) True G1040534
XM_021622725.2 mRNA downstream 54652 14249910 ~ 14252948 (-) True tdgf1
XM_021622713.2 mRNA downstream 94024 14198158 ~ 14213576 (-) False zmp:0000001301
XM_021622716.2 mRNA downstream 94024 14198158 ~ 14213576 (-) True zmp:0000001301
XM_036936986.1 mRNA downstream 94025 14198158 ~ 14213575 (-) False zmp:0000001301
XM_021622714.2 mRNA downstream 94026 14198158 ~ 14213574 (-) False zmp:0000001301
XM_021622729.2 mRNA upstream 518569 14829621 ~ 14831545 (-) True LOC110537020
NM_001124403.2 mRNA upstream 558687 14869739 ~ 14875572 (-) True c3ar1
XM_021622735.2 mRNA upstream 585296 14896348 ~ 14946975 (-) False LOC110537021
XM_021622732.2 mRNA upstream 586347 14897399 ~ 14935093 (-) False LOC110537021
XM_021622730.2 mRNA upstream 586347 14897399 ~ 14935321 (-) False LOC110537021
TU1185574 other downstream 127459 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 951805 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 984884 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 1131157 13147658 ~ 13176443 (-) True G1039364
TU1184467 other downstream 1155293 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 1793111 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 2013911 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 2013911 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 2222565 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 2754269 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile