RNA id: TU1186266


Basic Information

Item Value
RNA id TU1186266
length 2785
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1040975
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 14670057 ~ 14672944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTTACAATCCTTTACACATATATGGTGTATCATGATTTGTTTAAAGTGCATCAAAAACATGTTTCTCATTCAACACTATTCAATAACTGATCAATTTGAAATTTATTGAACAGGATATACTTGTTAATCAAAACAACCTGAATATAATCACCAATAAGCATCATTCCATTATAGTTACATTGAGTAGTGTTCAGTTCAATCCCAACCAtgtgtaatgtaaaaaaaaagtgaaacTAAAGACCCCCAAAAAGAATAAACCTTTAATACCCCTCAAACTTCAGTTATGCCAACATGCCCATTACTGTATAGTTAGCACTTTGTTTCTTCAAAATGACAGTATACACAGCTTGTCCCAGAAAGCAAAATGAATGCCTTCACACCTCCGATTGGATCTATTCCCAGGCATATTGACACTCTGCTTTGCATGACAAAATACCACAGGGATGTGAAGAGTAGGTAGTATAGGTTTTTATACTCATTAGGCAGACTCAATATGCTGTTTCTGTCCATAGGTATTTTAGATTGGACTCTCTGTGGTCCTATAATCCATGAAATGTTCTAGTATCCTGCCCTAAAACATACCAACATGGGAGTGTGAGGGTTTTTAAACTGAATAAAGGGATACTAGGCGGAGACTCAATATCAGCTATCCATTTGTTTCTGTCCATGGGTATTTTAGACTGTACTCTCTGTGGGCTTATTATcagaggttgtgtcccaaatggtaccctaatccctatatagtgtactacttcttTTTACTGGTCaagggctccagagtggcgcagcggtctaaggcactgcatctcagtgctagaggtgtcactacaaaccctggttcgataccaggctgtatcacaaccgtctgtgattgggagtcccataagtaagcgcacaattggcccagcgtcgtccaggttaggggagggtttggctgggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatattgtGCAGCGGCATTACTGTGACTGTGAGGGCTGTAGAAAAACCTCCGTAAGGTCACCTGTCTCCAACCAACATCTAGTAGATTCATACAATGTTTAATGCTTGGGAACCAACTAACACAGAGAGCAGAGCAGTGTTTGTGTGATGAACAGCAACTGATGACGACaatcctctcctctttaccttcctgATCTAGTCTGTACCGCTGTTTGAACCGAATGAAGACACGCATGCTGACAGATAGACAGGTTGGCATTCATCAgatccatctcctcttctctgacTCTGTCAGCGTGTCTCAGATGAACTTCCTCTGATTATCATTCTGCTTCCTATGAATCACCAATCCCAccaaacctgtctgtctgtctgacaaacCAAACTGGGTATTCTCATAAAGATTAGCACCTTGTGAAAGGAAGGTTGTGATTAGCCAGAGTGTTTTTGAGTGAGCCTAATGTTGTGAGTTCCGTTCAAAGCTTTTCTGAGAATTGGGTCTGTCAAAGTGTTCTAGCTGTGGGTGGTAAGGAAGCAGTGTTTCAAAGAAAACCGTTAAATGGCTAtgcttttattttttatcaaggaTAATGCAGAGCAAGCACACAAAATTACAGGTTATGCTTGCCACGGAACTTTCTGAAGTACAGtgaagtaaaaaaacaaaaaaacatttggaacataaaactgtatttacaTAAATTTTGTCAGTGGGATGTTCGATTCGAATATGTTTGTTCAATACATGTTCTCATGTATTTTGGTCAACAGATTCTGAGATGTTATTACTGTAGAGGTAATCTCTATGGCTAAGACATCTAAATCTCTCAATAAAGCAATTGCATCATCATAATACCAAAATACTTTCAACTCAATAATCCAAACATGTATTGTATCATCTTCATAACCGTACTGCaagtacatacagtataaatCCATCCAGGCATTATTATATTTTCAGTACTGTACCACCGGAGAGGAATATTAGACAGCGATTGTTATAAAGACATGAATTAATTCAACATTTACATTTTCAAATAATATTTACACTCCCATGAATGACAGTATCAACACCTTTCAAAGTCTATCATCTACACTTGTGTCATATTACCAGTACAAACAGTGTGTACAAAAAACAGTAAACAATATGTGGTCATCACTAGTtactacagccacaaagtcataaacccagTCTATTGCTACAATTTCTCTAAAATATAATGTCaaacgtaaccctaaccttaacccaatccttaactacactgctaaccttatgcctaaacctaaccttaaattaagaccgaAAAGCAAACTTTAGTTTCCATTATTGtttacgatatagccaattttggttttgtggctgtggtaactactTGAAACCACAATACATGGATGCATTTACAGATTATTTGTTGTCTTCTTCAAATCTTGGTCCGCCATCATGTTTTGACAGTTGCTGATGGTCTTTTACtgcatgtactgtgtgtgtaatgtactgtGAACGTAATTAACGTCTCTAGGTCTTGTCAAGGCTTGTCCTTCCTTAATCAGATTCATTGGATTAGTCCAACATCGAGAAGGTCGAGATGTGGATAGTTTGACTTAAATGAAATACTCCTTTTGGTTTTCACTTAGTATGTTCTGTGAGTTGGGCTCGCTGTGGAAAGGGTATTCAGGACTGTCGGCCTCAGGTTTGATTCCCTGGGGTTCTTGGGTGTGGAATGTCTCTTTCCGTCGATACAGGAACCTTGCCATTATTGCCAACGCACACAGAATCACAAATATCACCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1186149 lncRNA downstream 155469 14491274 ~ 14514588 (-) True G1040863
TU1185878 lncRNA downstream 238124 14431720 ~ 14431933 (-) True G1040597
TU1185874 lncRNA downstream 242784 14426469 ~ 14427273 (-) True G1040593
TU1185815 lncRNA downstream 280234 14389603 ~ 14389823 (-) True G1040534
TU1185790 lncRNA downstream 293968 14375862 ~ 14376089 (-) True G1040509
TU1186342 lncRNA upstream 118884 14791828 ~ 14792037 (-) True G1041048
TU1186343 lncRNA upstream 121003 14793947 ~ 14794188 (-) True G1041049
TU1186429 lncRNA upstream 183108 14856052 ~ 14856278 (-) True G1041131
TU1186430 lncRNA upstream 183727 14856671 ~ 14856898 (-) True G1041132
TU1186436 lncRNA upstream 187673 14860617 ~ 14861126 (-) True G1041138
XM_021622725.2 mRNA downstream 417109 14249910 ~ 14252948 (-) True tdgf1
XM_021622713.2 mRNA downstream 456481 14198158 ~ 14213576 (-) False zmp:0000001301
XM_021622716.2 mRNA downstream 456481 14198158 ~ 14213576 (-) True zmp:0000001301
XM_036936986.1 mRNA downstream 456482 14198158 ~ 14213575 (-) False zmp:0000001301
XM_021622714.2 mRNA downstream 456483 14198158 ~ 14213574 (-) False zmp:0000001301
XM_021622729.2 mRNA upstream 156677 14829621 ~ 14831545 (-) True LOC110537020
NM_001124403.2 mRNA upstream 196795 14869739 ~ 14875572 (-) True c3ar1
XM_021622735.2 mRNA upstream 223404 14896348 ~ 14946975 (-) False LOC110537021
XM_021622732.2 mRNA upstream 224455 14897399 ~ 14935093 (-) False LOC110537021
XM_021622730.2 mRNA upstream 224455 14897399 ~ 14935321 (-) False LOC110537021
TU1185711 other downstream 359005 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 489916 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 1314262 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 1347341 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 1517750 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 1431219 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 1652019 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 1652019 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 1860673 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 2392377 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile