RNA id: TU1187424


Basic Information

Item Value
RNA id TU1187424
length 1610
lncRNA type read_through
GC content 0.46
exon number 2
gene id G1041979
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15178565 ~ 15313769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAACAGTTAGTCAGCTCAGAAGTAGCTCCTAGCTAGACCTACCATAAAAATAAACACTGTACATCGATTCACATACTAGACAAGTTTAGCCTACTCTAACGAATGATAAATTGACATAATGAAAGAACTTGAGGTAAACTTGTATACAGAGGTAAACTTGTGTACAGTAGAAAACCTTTCTCGGTCAGTTTCAATGAAATGGACTCTAGGGCGTGTAAAATAAAAACAGGGATAATATTGGTCTAATGGACTTCCTGTCATACGAAGACTGACCTATGTGTTCCTGGGTGAGAGAACTCAAGTATCCCATCTAGTGTTCAAACATGGTTTTACaacattgatttaaaaaaaggctGTAACCATTATCCCACTGAGCACTTCAGGAAACAAATCTAACCAAAATGAACATTATATTTCTCTCTTAACATAGTTAGTGTAACCTAGTGATACATGAGGCACAAGTATTTTCATAGCATGTTATTAAGCAACTCACGAATCAATGCAGACATGAAGTGCCTCAGTCTGCAAAACATCACACATGCTATAGTCCTCTAATGTCACAATAATATGTAGAATTAGTAGCATTGAAGAGAAGGAATGTGTCATTCTCTTTCCAAACACTGGCTACTTTGAGAATAGAAGACTGTCTAACCTCTCATGGGCTCTTTCCACTCCAAGGCATTTTTCTTCTACCTCCCTCAGTGTGAGTTCTGAGGTGTCCCTTGATATGGCTGGACTGACTGAATCCTTTCCCGCAGACAGGACAGGAGTAGGGCTTCTCCCCCGTGTGGACCCTCAGGTGGGTCTTCAGATGGACTGACTGGTTGAAGCGTTTACCACACACGTGGCAGCGGTatggtctctctcctgtgtgaatgcgTTGGTGCTCCTTTAACCTGCCTGAGTAGCTGAAACTCTTGCCACACACGCCACAGTGGAAGGGCTTATCCTTAGAGTGAGAACACATGTGGACCTTGAGGTAACTGGTAGAGGTGAATGACTTCCAACAGACTGTGCAGAGGATTTGCCTGTGACTAGTGTCACcactgtgtggttctgtgtgggATAGCATGTGTGCCTCCAGTTGGGATAGCTCACAGAACACAGCACCACACTGAGTacatgagtgtgtctgtgtgtcctctgGTCTTCTTTCTGGATCTCTCGAAACATCAGGAACACTTTCAGTGTTCTCACTCTGTGTTCTAGAACAGTCTGGATTTACTGCAGAGAGGGGCTGAGACTGAGGGGAGTCACTGGTTGGTTCTGATAGTGATACTCCATAGCCCTCTCCACCAGGTTCTGTTTTGATCTGTCCAGTTGTGTTGGTCAGTAGAGAGtacttctctctgttctccacaGTTTGGGGAAGATGTGTGGGCTGAGGTGGCTCCTGATCACAGTCACTTTTCACACAGGGAGGAATGGTTATGGAGTCTTCTTTGGTATCAGCCTCAGGCCCTTGAATCTGCTCTACCTCCTGACGGGTCCTGAGTTCACcctgttcctctttaatctgtgTGGGCTCTGGGTCCCTCTGGCCTAGACTGGGGCTCCACTCCTGCTCACAGCGCTGTTGCTCAGGGGGAGTTTGCTGCTCTGAGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187467 lncRNA downstream 817 15225721 ~ 15268296 (-) True G1042016
TU1187426 lncRNA downstream 31374 15178565 ~ 15237739 (-) False G1041979
TU1187359 lncRNA downstream 130402 15113505 ~ 15138711 (-) True G1041932
TU1187369 lncRNA downstream 189819 15076403 ~ 15079294 (-) True G1041934
TU1187290 lncRNA downstream 193687 15071692 ~ 15075426 (-) True LOC110537023
TU1187521 lncRNA upstream 32780 15316872 ~ 15317081 (-) True G1042069
TU1187524 lncRNA upstream 38679 15322771 ~ 15323060 (-) True G1042072
TU1187528 lncRNA upstream 39919 15324011 ~ 15328086 (-) False G1042074
TU1187526 lncRNA upstream 42243 15326335 ~ 15327083 (-) True G1042074
TU1187529 lncRNA upstream 45639 15329731 ~ 15329970 (-) True G1042075
XM_021622743.2 mRNA downstream 114726 15152009 ~ 15154387 (-) True LOC110537028
XM_021622738.2 mRNA downstream 154785 15099544 ~ 15114328 (-) False LOC110537025
LOC110536797 mRNA upstream 53427 15337519 ~ 15339341 (-) True LOC110536797
XM_021622749.2 mRNA upstream 60828 15344920 ~ 15362787 (-) True LOC110537035
XM_036937005.1 mRNA upstream 80594 15364686 ~ 15381943 (-) True LOC110537036
XM_036937007.1 mRNA upstream 124899 15408991 ~ 15449890 (-) False LOC110537037
XM_036937006.1 mRNA upstream 124899 15408991 ~ 15449896 (-) False LOC110537037
TU1185711 other downstream 958061 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1088972 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 1913318 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 1946397 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 2116806 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 820071 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 1040871 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 1040871 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 1249525 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 1781229 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile