RNA id: TU1187908


Basic Information

Item Value
RNA id TU1187908
length 536
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G1042425
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16012227 ~ 16012762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaatgttcatttcacttttgtatattattctacttcacttgctttggcaatgttaacacatgtttcccatgccaataaaacccattGAATTGAATAGATAGACTACTACCACTAACCTTTATacatggttagagagagagggtactTCAGGCCGAGCTGGTCATCTTTGAAAGAGTCCACAAAGTCCTCCAGCATCTGCAGACCATGACTGTTTCCACGATGACACTTCCTGACAAAGATGGAGTCCATAACAGGCAGCTGGTAGCGTTGGGTCACAAAGCCATTACACAAGctgtctggagagagaggaagagattcTGTTAATTCATGTCTTGaaagtagaggttgaccgattaaaaTCGGAATGGCTGAATAATTAGGGCCGATTCCAAGTTTtcataatcggaaatcggtatttttggacaccgattttgtcaattttttttttacatttacgcctttatttaacctttatttaactaggcaagtcagttaagaacacattcttattttcaatgacggcctagcaacggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187865 lncRNA downstream 7485 15975853 ~ 16004742 (-) True G1042386
TU1187890 lncRNA downstream 18204 15989910 ~ 15994023 (-) True G1042409
TU1187637 lncRNA downstream 146580 15844721 ~ 15865647 (-) True G1042167
TU1187649 lncRNA downstream 468230 15511196 ~ 15543997 (-) True G1042179
TU1187645 lncRNA downstream 507358 15504369 ~ 15504869 (-) True G1042175
TU1187911 lncRNA upstream 645 16013407 ~ 16013704 (-) True G1042426
TU1187913 lncRNA upstream 4755 16017517 ~ 16017749 (-) True G1042428
TU1187914 lncRNA upstream 5164 16017926 ~ 16018160 (-) True G1042429
TU1187915 lncRNA upstream 5638 16018400 ~ 16018666 (-) True G1042430
TU1187918 lncRNA upstream 16547 16029309 ~ 16029665 (-) True G1042433
XM_036937031.1 mRNA downstream 91972 15882214 ~ 15920255 (-) True LOC110537052
XM_036937028.1 mRNA downstream 91979 15879419 ~ 15920248 (-) False LOC110537052
XM_036937030.1 mRNA downstream 91979 15879419 ~ 15920248 (-) False LOC110537052
XM_021622770.2 mRNA downstream 91980 15879419 ~ 15920247 (-) False LOC110537052
XM_036937029.1 mRNA downstream 104102 15879419 ~ 15908125 (-) False LOC110537052
XM_036937042.1 mRNA upstream 294595 16307357 ~ 16312117 (-) False mzt2b
XM_021622781.2 mRNA upstream 294595 16307357 ~ 16312342 (-) False mzt2b
XM_021622778.2 mRNA upstream 294595 16307357 ~ 16312346 (-) True mzt2b
XM_021622776.2 mRNA upstream 307666 16320428 ~ 16324557 (-) False ppwd1
XM_021622775.2 mRNA upstream 307666 16320428 ~ 16324762 (-) True ppwd1
TU1185711 other downstream 1701175 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1832086 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2656432 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2689511 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 2859920 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 91401 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 312201 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 312201 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 520855 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 1052559 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile