RNA id: TU1187996


Basic Information

Item Value
RNA id TU1187996
length 721
RNA type TUCP
GC content 0.42
exon number 1
gene id G1042500
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16104163 ~ 16104883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagagttccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcaataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaaccttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187992 lncRNA downstream 1910 16102043 ~ 16102253 (-) True G1042496
TU1187946 lncRNA downstream 45623 16058296 ~ 16058540 (-) True G1042461
TU1187921 lncRNA downstream 69966 16033735 ~ 16034197 (-) True G1042436
TU1187918 lncRNA downstream 74498 16029309 ~ 16029665 (-) True G1042433
TU1187915 lncRNA downstream 85497 16018400 ~ 16018666 (-) True G1042430
TU1188038 lncRNA upstream 2959 16107842 ~ 16175576 (-) False G1042533
TU1188039 lncRNA upstream 2959 16107842 ~ 16175959 (-) True G1042533
TU1188050 lncRNA upstream 15341 16120224 ~ 16124534 (-) True G1042540
TU1188036 lncRNA upstream 52101 16156984 ~ 16174778 (-) True G1042532
TU1188062 lncRNA upstream 61318 16166201 ~ 16168737 (-) False G1042552
XM_036937031.1 mRNA downstream 183908 15882214 ~ 15920255 (-) True LOC110537052
XM_036937028.1 mRNA downstream 183915 15879419 ~ 15920248 (-) False LOC110537052
XM_036937030.1 mRNA downstream 183915 15879419 ~ 15920248 (-) False LOC110537052
XM_021622770.2 mRNA downstream 183916 15879419 ~ 15920247 (-) False LOC110537052
XM_036937029.1 mRNA downstream 196038 15879419 ~ 15908125 (-) False LOC110537052
XM_036937042.1 mRNA upstream 202474 16307357 ~ 16312117 (-) False mzt2b
XM_021622781.2 mRNA upstream 202474 16307357 ~ 16312342 (-) False mzt2b
XM_021622778.2 mRNA upstream 202474 16307357 ~ 16312346 (-) True mzt2b
XM_021622776.2 mRNA upstream 215545 16320428 ~ 16324557 (-) False ppwd1
XM_021622775.2 mRNA upstream 215545 16320428 ~ 16324762 (-) True ppwd1
TU1185711 other downstream 1793111 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1924022 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2748368 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2781447 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 2927720 13147658 ~ 13176443 (-) True G1039364
TU1188176 other upstream 220080 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 220080 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 428734 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 960438 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 960438 17065321 ~ 17067128 (-) True LOC110537077

Expression Profile