RNA id: TU1188063


Basic Information

Item Value
RNA id TU1188063
length 243
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G1042552
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16166201 ~ 16170494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagagaggatagagacaaggagaggagacagagaggatagagcagggatacagaggaaacaaagAGGAAAAAGACAAGGAGTGGagcaagagaggatagagacaaggagaggagaaagagaggatagagacaaggagaggagaaagaggggatagagacaaggagaggagacagagaggatagagacaaggagaggagacagagaggatagagacaaggtgaggaaacagagaggatagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1188050 lncRNA downstream 41667 16120224 ~ 16124534 (-) True G1042540
TU1187992 lncRNA downstream 63948 16102043 ~ 16102253 (-) True G1042496
TU1187946 lncRNA downstream 107661 16058296 ~ 16058540 (-) True G1042461
TU1187921 lncRNA downstream 132004 16033735 ~ 16034197 (-) True G1042436
TU1187918 lncRNA downstream 136536 16029309 ~ 16029665 (-) True G1042433
TU1188070 lncRNA upstream 36008 16206502 ~ 16209108 (-) True G1042558
TU1188202 lncRNA upstream 135627 16306121 ~ 16306330 (-) True G1042657
TU1188184 lncRNA upstream 147771 16318265 ~ 16320083 (-) True G1042646
TU1188213 lncRNA upstream 163735 16334229 ~ 16334543 (-) True G1042665
TU1188219 lncRNA upstream 166181 16336675 ~ 16337001 (-) True G1042670
XM_036937031.1 mRNA downstream 245946 15882214 ~ 15920255 (-) True LOC110537052
XM_036937028.1 mRNA downstream 245953 15879419 ~ 15920248 (-) False LOC110537052
XM_036937030.1 mRNA downstream 245953 15879419 ~ 15920248 (-) False LOC110537052
XM_021622770.2 mRNA downstream 245954 15879419 ~ 15920247 (-) False LOC110537052
XM_036937029.1 mRNA downstream 258076 15879419 ~ 15908125 (-) False LOC110537052
XM_036937042.1 mRNA upstream 136863 16307357 ~ 16312117 (-) False mzt2b
XM_021622781.2 mRNA upstream 136863 16307357 ~ 16312342 (-) False mzt2b
XM_021622778.2 mRNA upstream 136863 16307357 ~ 16312346 (-) True mzt2b
XM_021622776.2 mRNA upstream 149934 16320428 ~ 16324557 (-) False ppwd1
XM_021622775.2 mRNA upstream 149934 16320428 ~ 16324762 (-) True ppwd1
TU1187996 other downstream 61318 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 1855149 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1986060 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2810406 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2843485 13321210 ~ 13322716 (-) True LOC110536986
TU1188176 other upstream 154469 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 154469 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 363123 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 894827 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 894827 17065321 ~ 17067128 (-) True LOC110537077