RNA id: TU1188184


Basic Information

Item Value
RNA id TU1188184
length 1757
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1042646
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16318265 ~ 16320083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACAAAAGCCATGATAAAATCCACGAGTAACGTGTGGATGTGCACTGTGCTTCTAAATGTTTTAAAAACTCCTGTCAGAATCTGAGATGCTTTAACAGAGGGCTCTTCACACATGCATTTTATTTCTACATAGAATTTGTAACATTACATAGCAATGAGGAAAGTGAATTCAAACCAAAGGATGGTTCCTCCATACAATAACAGGAGTTGAAAGGTGTTTGGTTAATGTTTCACATCTACATGTGGGTAACATTAATGTAGAATGTAACAATCAGCACTCCAGACAGATGGGCTAAAACAGAAGACCATCACAGGTTGTGATGAAAAAAATTCAAACCAGGGGTCCTGGTTTCAAAAGAAGCCAGTATCACACTCTGTAGGGCACAACATTCTGGAACGTTCAGAAATATAGTGTGTAGATCATCCTCTGTCAATTAGATGAAGGAATCATGTCTAGTCAATCGTTGCACCCTCATGAGCACAACCCAGATGTATTGAAGCGGCAGAAAAGTGCATCCAATGAATTCTGCATGCAAGACACTCCACAAAACAGGTGGGAGAAAGATTTCATATAACACTTTAGATATTTCCCACCACAGCTACTACAATATCccctacccacccacccaacaTAAATAGCTTTTTCACTCAACTGCACTATTTAACCAATGTCAATAATAGCTGAACTCAGCCCACTACCGGTGTCATTTCAAGACCTGATGCTGCATTACATGAAATCATCACAAGTCAAGTGCATTGGTACCAATGAAGAAAATCTACAACATGGAGTTTCGCCATGAACTGAATCTCATCTGATCTGCATTGAGGCAATATGTAGTCTTATAAGCAGTTAGTTTAGTAAGCTTGAGGGAATCCCTATAACCTGGCCCTGTTAGCATACCCAGGATAGAGCAGAGTACAAAGCATTACGACTAATGATGGCTTCACTGGCTGTGGGTAAGAAGCTTATCTGCAGGTTAGGGGTGAGAAGGGTAGAACGGCTATGGGATGTAGGGCTAAGGCCTTAGACTAGGGCCTTGGTATGGGGTGAAAGACTAGGGCCTTAGTATGGGGTGAAATGTAGGGCTAGGGCCTTAGTATGGGGTGAAAGGTAGGGCTAGGGCCTTAGTATGGGGTGAAAGGTAGGGCCTTAGTATGGGGTGAAAGGTATGGCTAGGGCCTTAGTATGGGGTGAAAGGTAGGGCTAGGGCCTTAGTATGGGGTGAAAGGTAGGGCTAGTGCCTTAGTATGGGGTGAAATGTAGGGCTAGGGCCTTAGTATGGGGTGAAAGGTATGGGATGAGACTTTGGTAGGACTGGTCTTTAGGGTATGGGTTAGACTGGGTCTACCATAAGCCAATCATCAGGTAAAAGGTTTAGGTAGATGTGACTGGTGCAGGTCTATGGTGGACAGGTCTTTATGGTGTGGATGGTTTAAGAAGATTGTTCTGGGATCTATGGTAAGGGGTTTTTACTTGGTAACAGAAGTCAGTCATCAGGGGAGGTCTAGGCCACGTCCAGTACACCTGCAGCAAGGGGAGGTCTAGGTCACGTCCAGTACACCTGCAGCAAGGGGAGGTCTAGGCCACGTCCAGTACACCTGCAGCCACCAGCTGTCGGGACAGCCAGTCCAGGCCCTCGTGGAGCCCCATGCCACTGCGGGCGTCACATCCCTGGATGTGCCAGCTCCTCCCACAGCACAGCTTATGGAGACTCAGCAGCTCCGTCATCTCCTCCACCGACACAGCCCCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1188202 lncRNA downstream 11935 16306121 ~ 16306330 (-) True G1042657
TU1188070 lncRNA downstream 109157 16206502 ~ 16209108 (-) True G1042558
TU1188036 lncRNA downstream 143487 16156984 ~ 16174778 (-) True G1042532
TU1188063 lncRNA downstream 147771 16166201 ~ 16170494 (-) True G1042552
TU1188062 lncRNA downstream 149528 16166201 ~ 16168737 (-) False G1042552
TU1188213 lncRNA upstream 14146 16334229 ~ 16334543 (-) True G1042665
TU1188219 lncRNA upstream 16592 16336675 ~ 16337001 (-) True G1042670
TU1188253 lncRNA upstream 43246 16363329 ~ 16363597 (-) True G1042704
TU1188271 lncRNA upstream 59078 16379161 ~ 16379363 (-) True G1042722
TU1188294 lncRNA upstream 83378 16403461 ~ 16403692 (-) True G1042745
XM_021622778.2 mRNA downstream 5919 16307357 ~ 16312346 (-) True mzt2b
XM_021622781.2 mRNA downstream 5923 16307357 ~ 16312342 (-) False mzt2b
XM_036937042.1 mRNA downstream 6148 16307357 ~ 16312117 (-) False mzt2b
XM_036937031.1 mRNA downstream 398010 15882214 ~ 15920255 (-) True LOC110537052
XM_036937028.1 mRNA downstream 398017 15879419 ~ 15920248 (-) False LOC110537052
XM_021622776.2 mRNA upstream 345 16320428 ~ 16324557 (-) False ppwd1
XM_021622775.2 mRNA upstream 345 16320428 ~ 16324762 (-) True ppwd1
XM_021622782.2 mRNA upstream 4873 16324956 ~ 16328168 (-) False LOC110537059
XM_021622783.2 mRNA upstream 4873 16324956 ~ 16328168 (-) False LOC110537059
XM_036937044.1 mRNA upstream 97555 16417638 ~ 16549073 (-) False LOC110537061
TU1187996 other downstream 213382 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2007213 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 2138124 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2962470 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2995549 13321210 ~ 13322716 (-) True LOC110536986
TU1188176 other upstream 4880 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 4880 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 213534 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 745238 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 745238 17065321 ~ 17067128 (-) True LOC110537077

Expression Profile