RNA id: TU1188302


Basic Information

Item Value
RNA id TU1188302
length 1046
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1042753
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16413450 ~ 16414495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACTATAGGCTGGATCTGATCTGAGCAATATGAACACTAAGACATTCATATCTATATGTTGGTTAATGCTagcaatgttgttgtttgtttaaaaTGATATCTTCTTACCTCACACTGGGAATGTTCATTGATGGTGTAGTACCAACACaccacccctcacctctcacccctTCACATGGTCTTCCCCAGTTGTATCCTGTATTATTCCTAGTGGTGTCAAACATTCTTCTAATATAAACCCTCCACAAGTGACATTGCTTCTGGCGTTGGTTGGGGTTGTGAAAAGGGACCGCCACCTGTGTGGTACTGACCCAGCggaccagacagaccaggcccAGATGCAGCCATGCTGTGGAGGATAAACCAGTAGGACTTGATGGAACCCCCAGACCAAACGGAAATACAATTAAAGAGTCACAAAGGAAACACATGTGGACTGCTAAAATCATAGGACTATGCTACTTGGTAGCCACCCTCAGTTTAACTAAGGACGTTAGACCCGTGATCTTTGGTGATGAAACATTGAACCAGGACATTTGGACATTAGTGGACCATGAAAACTAAAGCATTTCAACTACATTCAACTCAACATGCTGGGTCTTCTTCCAGAGCTGTTCCTTCCTTTCCTTAAATCCTGAGGCTTGAAGTAACCGTCTACTGGCATTGGGACACGGGGCCTACAGACAATGAGACAGATGGACTGACAGAGACACTCTAGAAGACACTCAATCAAACTGGTACTCATAGATGTTATCAATGTCACTGCTTTACCCTGTACCTTCAAGTGcaagagagaatggaaaacaaaaAGCATTATTTGAAGAGTTATGTTTATTTCATATTCAGTATTAATGTTGGTACACTGTTACaattgttttttttgtaaatgatATGCTAATTTATTGCCATGTGTCACTtgttttagatttttgttcactGCATGCAAACAGAACGTTAGTCTAGTGACAAAGAAATACAGTTAAATAGGCCCCTTCACCAAACTGTTTTAATGTAGATATATCAGGTCAATAAAAACAACAGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1188294 lncRNA downstream 9758 16403461 ~ 16403692 (-) True G1042745
TU1188271 lncRNA downstream 34087 16379161 ~ 16379363 (-) True G1042722
TU1188253 lncRNA downstream 49853 16363329 ~ 16363597 (-) True G1042704
TU1188219 lncRNA downstream 76449 16336675 ~ 16337001 (-) True G1042670
TU1188213 lncRNA downstream 78907 16334229 ~ 16334543 (-) True G1042665
TU1188303 lncRNA upstream 1710 16416205 ~ 16416466 (-) True G1042754
TU1188536 lncRNA upstream 74428 16488923 ~ 16490600 (-) True G1042955
TU1188604 lncRNA upstream 183219 16597714 ~ 16598284 (-) True G1043015
TU1188606 lncRNA upstream 183963 16598458 ~ 16598766 (-) True G1043017
TU1188611 lncRNA upstream 189717 16604212 ~ 16604439 (-) True G1043022
XM_021622782.2 mRNA downstream 85282 16324956 ~ 16328168 (-) False LOC110537059
XM_021622783.2 mRNA downstream 85282 16324956 ~ 16328168 (-) False LOC110537059
XM_021622775.2 mRNA downstream 88688 16320428 ~ 16324762 (-) True ppwd1
XM_021622776.2 mRNA downstream 88893 16320428 ~ 16324557 (-) False ppwd1
XM_021622778.2 mRNA downstream 101104 16307357 ~ 16312346 (-) True mzt2b
XM_036937044.1 mRNA upstream 3143 16417638 ~ 16549073 (-) False LOC110537061
XM_036937045.1 mRNA upstream 154991 16569486 ~ 16576847 (-) False LOC110537062
XM_036937046.1 mRNA upstream 154991 16569486 ~ 16576847 (-) True LOC110537062
XM_036937052.1 mRNA upstream 201872 16616367 ~ 16625697 (-) False LOC110537069
XM_036937054.1 mRNA upstream 201872 16616367 ~ 16630117 (-) False LOC110537069
TU1188176 other downstream 85336 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 85336 16324963 ~ 16328114 (-) True LOC110537059
TU1187996 other downstream 308567 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2102398 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 2233309 14178658 ~ 14180141 (-) True G1040300
TU1188573 other upstream 119122 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 650826 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 650826 17065321 ~ 17067128 (-) True LOC110537077
TU1190341 other upstream 1281634 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 1603609 18018104 ~ 18018758 (-) True G1044649

Expression Profile