RNA id: TU1188660


Basic Information

Item Value
RNA id TU1188660
length 4271
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G1043067
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16726131 ~ 16731656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaatgttaaaatattgTAGGAGAATAGAAATGCAAGAGCAAGTTACGtccgtcgtcggtggaagaaggtgaggaccaaggtgcagcgtggtaagtgttcatgatatttaatATAATCAAaattgaacactaaacaaaataacaactaggaagaatgaacaaacgaaacagtcctgtctagtgacgacacacaaaacagaaaataaacacccacaaaacacaggtggaaaaaggctacctaagtatgattctcaatcagagacaactaacgacacctgcctctgattgagaaccataccaggccaaactcaaaaatcaacctagaaaaacaaacatagactgcccaccccaactcacgccctgaccatactaaagcaaaaacaaaacaaaggaactaaggtcagaacgtgacagtaaggtcatattgaaaatgagctccctggatgcaattcctatggcttccacagagtgtcagcagtctatgttcagggtttcaggcttgtaacttcaaaaacgaataagaaatatcagttttagcaaaaggacacagtcttggaaattcgtgtttgcgcGCGCCATGAAGACAATACGCACCTGCTAAATCaatttcctattgaacatacttctttccgtaagaaaaattatagtttgattacattttaggttATCCGAGGtttaaatagaaatgtattttgacttgttgaaacaaagtttaggggtagatttttggaTTCTTTTTTCTGCACGTTGAACGAGTGGATATCTCAAattgatggcgccaactaaacagattttttgggatataaagaaggattttatctaacaaaacaacactacatgttatagctgggaccctttggatgacatatcagaggaagattttcaaaaagtaagtgaatatttaaccgttatttgtgaatgtatgaaacctgtgcagGTGGAGAAATATTTTGATGTGTGGCGCcctcctcaaacaatcgcatggcatgtttttgctgtaatagctactgtaaatcggacagtgcagttagattaacaagaatttaaggtTTCActggaagttgtcccgctagcgggactcctatccctaagaagttttaatgccttttgccaatcagttgtgttgtgacaaggtaggggtggtatacagaagatagccctatttggtaaaagaccaagtccatattttgaaaagaacagctcaaataagcaaagagaaacgacagcccattattaatttaagacatgaaggtcagtcaatccggaacatttcaagaactttgaaagtttcttcaagtgcagttgcaaaaaccatcaaacgctatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagttacctttgctgcagaggataagttcattagagttaactgcacctcagattgcagcccaaataaatgcttcacagagttcaagtacctgccacatcttaacatcaactgttcagaggagactgtgtgaatcaggccttcgtggtttgctgcaaagaaaccagtactaaaggacaccaataataagaagagacttgcttgggccaagaaacacaaccaatgggcattagactggtggaaatctgtcctttggtctgatcagTCCAAAGTtgctatttttggttccaactgctgtctttgtgagatgcagagtaggtgaacggatgatttctgcatgtgtggttcccaccgtgaagcatagaggaggagatgGTTGAGGATgacttggaccgcagagtgaaggaaaagccgccaacatgctcagcatatgtggcaaCTCCTTGGACTCCTTGGagagtgttggaaaagcattcctcatgaagcaggttgagagaatgccaagcatgtgcaaagctgtcatcaaggcaaatggttgctactttgaagaatctaaaatctaatttttttttaaatttgcttaacacttatttggttactacattccatatgtgttatttcatagttttgatgtcttcactattattctacaatgtagaaaatagtaaaaataaagaaaacactggaatgagtacatttgactggtactgtgtgtatatttCTTTTCATCCGGATTTTGGAAATTCTCCCAACCCCTAGTTTGGGAAGGGTTAGCTGACATGCTAAGTAATTGTAAAGTTGTTAAAAAGTattaagtagttgcaaagtgtCTAATTAGCTAAAATACTAAAGTTGTCTGATGAGATACAAACACGAAACCTTCGGTTGCTAGACTTTCCATCCATccaccctacttttgtttttgcattaagTAAACTTCtctcttatgtaaccataccaaacgtaacacatcatactaaagagtgtcggatttacatttactatgttttGTCTAACCTCTTACTTTAACCATGAACCTATATCCTAATCTTAGACATAACCCTAGATGATTCAGAGCAGATAGCTCATGTACTCAGATAGCTCATGTATCTCAACAGGTCTTGTGAAATAGCTGATGTCGTTTCTAGCGTGGCCATCTAGTGATTTCcatatctccccctcctccttcctccacttACAAGGGCTCTGATGGCAGCCATGTTTACTTTGTCAGAGACAATCAGAGACTAGGCCAGGAGCGCGCTCTGAGGACACAGACACTGATAGTGGATGGGtaaggggcgagagagagagagagagagagagagtaatgcaGGCAGTTACATAAGGGTGTTGTGGGAACAGAGTCTCCTGAGAAAGAGTGAtgagggagaaggaagagaaaaGAAAACAAACAGTGGAAACATGCTAACTAACCAGTATCAGCAGTCTGGATGCAAGTCAGTTAGTGTTAAAGTGGTCAGTGTTAAAGTCGCTCAAAGTTGGTCAgtgttgaatcaaatcaaatcacatgttatttgtcacatacaccaaatacaacaggtaacaaccttacagtgaaatacttacttacaagcccttaaccaacaatgcaatagcctgggtagccatttgattagctgttcaggagtcttatggcttgggggtagaagctgttgagaagccttctGGACCTATAcatggcgctctggtaccgcttgccgtgcggtacagagagaacagtctatgactagggggctggagtctttgaccatttttagggccttcctctgacactgcctggtatagaggtcctggatggcaggaagcttggtcccagtgatgcactgggccgtacacactaccctcttgtagtgccttgtggtcgaaggccgagcagttgccataccaggcagtgatgcaaccatgctctcgatggtgcagttgtagaactttttgaggatctgaggacccatgccaaaccttttaagtctcctgagggggaataggttgtcttgccctcttcacgactgtcttggtgtgtttggaccatgatagtttgttggtgatgtggacaccaaggaactacCCCTCCTTTGCTCACCAGGGTTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACCAGGGTTCCAATATAACATGTCGAACTACCCCTCCTTTGCTCAAAAGGTTCCAATATAACATGTCGAACTACCCCTCCTTTGCTCAAAAGGTTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACCAGATTCCAATATAGCATGTCGAACTACCCCTCCTCTGCTCACCAGGGTTCCAATATAACATGTCGAACTACCCCTCTGCTCAACAGGGTTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCAAAAGGTTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCAAAAGGTTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACCAGATTCCAATATAACATGTCAAACTACCCCTCCTCTGCTCACCAGATTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACCAGGGTTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACCAGGGTTCCAATATAACATGTCAAACTACCCCTCCTCTGCTCACCAGGGTTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACCAGGGTTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACCAGGGTTCCAATATAACATATCAAACTACCCCTCCTCTGCTCACCAGATTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACCAGATTCCAATATAACATGTCGAACTACCCCTCCTCTGCTCACTAGGTTCCAATATAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1188661 lncRNA downstream 364 16725494 ~ 16725767 (-) True G1043068
TU1188658 lncRNA downstream 1377 16720868 ~ 16724754 (-) True G1043065
TU1188659 lncRNA downstream 5424 16718702 ~ 16720707 (-) True G1043066
TU1188620 lncRNA downstream 85281 16640607 ~ 16640850 (-) True G1043030
TU1188546 lncRNA downstream 87234 16634735 ~ 16638897 (-) True LOC100305243
TU1188684 lncRNA upstream 38945 16770601 ~ 16770803 (-) True G1043091
TU1188692 lncRNA upstream 45647 16777303 ~ 16777578 (-) True G1043099
TU1188747 lncRNA upstream 60558 16792214 ~ 16805207 (-) False G1043143
TU1188749 lncRNA upstream 65230 16796886 ~ 16805207 (-) True G1043143
TU1188776 lncRNA upstream 127186 16858842 ~ 16862592 (-) True G1043166
NM_001165148.2 mRNA downstream 87180 16637490 ~ 16638951 (-) False LOC100305243
XM_036937051.1 mRNA downstream 96011 16616367 ~ 16630120 (-) True LOC110537069
XM_036937054.1 mRNA downstream 96014 16616367 ~ 16630117 (-) False LOC110537069
XM_036937052.1 mRNA downstream 100434 16616367 ~ 16625697 (-) False LOC110537069
XM_036937046.1 mRNA downstream 149284 16569486 ~ 16576847 (-) True LOC110537062
XM_036937061.1 mRNA upstream 208771 16940427 ~ 17024994 (-) False LOC110537074
XM_036937058.1 mRNA upstream 208771 16940427 ~ 17025001 (-) False LOC110537074
XM_036937059.1 mRNA upstream 208771 16940427 ~ 17025002 (-) False LOC110537074
XM_036937060.1 mRNA upstream 208771 16940427 ~ 17041905 (-) False LOC110537074
XM_036937062.1 mRNA upstream 310715 17042371 ~ 17064591 (-) True LOC110537073
TU1188573 other downstream 181405 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 398017 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 398017 16324963 ~ 16328114 (-) True LOC110537059
TU1187996 other downstream 621248 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2415079 14307600 ~ 14311052 (-) True G1040432
TU1189216 other upstream 333665 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 333665 17065321 ~ 17067128 (-) True LOC110537077
TU1190341 other upstream 964473 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 1286448 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 1324455 18056111 ~ 18058392 (-) True G1044671

Expression Profile