RNA id: TU1188776


Basic Information

Item Value
RNA id TU1188776
length 3727
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1043166
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16858842 ~ 16862592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAAATTGATATTGGTGTATCAAATCTGAATTTTAACACATGAGCAATGTTGACACGGTTGAAGAAGTACAATCGTTTACCTATCATAATAAATAAAATGGAACATGAATGATATTTGTCTTTGGACAAAGGACCTATGGACAAACCTCTAGGGGAGGAGGGGACAAGAGACACTAGACAATGTTTCTGCACCCAAAAACAAACAGAGAAGGGCTTTTAaagcacagaacacagaaccaTTCAGCTAAAAATGAAAGACACTAAAAGTTGTAACCAAAGTTGGTTGGCTTTTTCATTTCAATGAACAAAGTTTGGTAGTCAGAACTCCCGTTTGGTTGTTTTAAAGCGTTAAGACAAGGCAAGAAAGAAGGCTGTTCTCATTGAATAATTCTAGAGAGATAACTAAAAAGTTAAAAAAGGAGAAACATAAAAAAGCGTAACAAAACAAAATTGAACAGTCAAGACCAACATAGCAACTTTCTGTCCTGCACAAAGTCAAGGAGTCGACAGAAGAGGCGTGTTGTGGGTTCGTTGTAGAGGCAAGTACATGTTTTAATTGGTTGTTCTGCATATAATGTAGATTATTTTTTTGTGACTTGAACACTGTGGAAGGAGACATGATGCGTGAACAAACCAAATTTCACCACAGCGTATTACTATGCTAATTATTAGTAAAGAGTCAGGGATTTTTTTCACGGCTTCGTAGGCACTGGGCCGGAGTTCTCCATTTGTAATGCTAAGGCATTACTGATCGGGCTCCTGggcagtttctctctctttctctcctcttatACCACGGTGCCCAATACAACTGTGTTCAACTGGAGGATTAATATATTTTGCTGGTCCATACTAAATACAACATCCATGTCCTTTTTTGCAAACAGCCGGTTCCTGTCAAGCAGTCCAGTggatgtcagtctgtctgtctctctggggtcgcCCAGCTAACAGTCCCACTGAGATGACCCCTAACCTTTGACCTTTGTCCTGGCCCCTGATGACGCAACGCGACACGTTTTAAAAGTCCTTCTGATATGTTTTGGTTATAAAAACCATGGTACTGCAGCTTCAAGTATTTTGCATTACATAGAATATGATTTAATAAATTAGTTAACGTATACATTTGTTTTCAATATTCAGACATATactattatatatacagtacaataaaatgctctcattctctcttttttATTTTCCTTTGCTTTTTTTGTTGAGAAATCCCTGAGAATGTATGTTGACAGTTGCTAAGTTTCCACAAGCGCAAGCACTATGACAGTATAATTGTGTTTTTCTGCAAGTGTGTGTTTACAGGTTGTTTCTGCAACTGCATGAGTTTCTGAGTGTGTCTGTTACTATGTGTttctatgcgtgtgtgtgtgtgtgtgtgtgtttctgcacgTGTCTAAAGCATCAGGGTAAACAACACTGCAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGGCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGCCAGCCTGGAGTTGGTGATCCCTGTTACTAAAGCCACAGCAGACCGTCAGCCTGGAGTTGGTGATCTCTCTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTGGAGTTGGTGATCCCTGTTACTAAAGCCACAGACAGCCTtgagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACATCCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGTCACAGCAGACAGGCAGCCTGGAGTTGGTGATCCCTATTACTAAAGCCACAGCAGACAGTCAGCCTGGAGTTAGTGATCTCTCTCAGCCTGGAGTTGGTGATCCCTGTTACTAAAGCCACAGCAGTCAGCCTGGAGTTGGTAATCTCTGTTACTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACCGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTGTTGTTGGTGatctctcttactaaagagacaTAAAACAAGAAATTGTGGACTGAACTGGATAGTGAACTGTTTGTGTTGTTATTTAACTGttaacacacactgaccacactGAGTGGGGGAAGGAGGGGTGAGGAAGGGCTAAGGATAAGGGGGGAATAAAGCTGGGTCCGTACGAGGTACTGGTCATGTCTGATGGAGTTGCTCTGTTTGGTTTTAAGCCTTGTTTGTCTCATTGTCTCTGAGCTGTGAGCATTTAACAGAGGGGGACAGGAGTGCTATGTGGACATCTCGCCACTGGACAACATATACTCAGTGTAAAAagattttatttttctctttagttctctctctctctcttacactcttTCACACTGTCTTTATACataaagggacacacacacacacacttccacaacATGACAATTTTCTTTTTTGTTTGCTTGTGAACTAAATAGGGTCTATACACATTAATACCGATGTGGCCTTTTGTTGTTTTCAGGTTTTTCTTTCACTTATTCCGTCACTTTTTAAGTTAAAAGGGATACAAACGCAGAATCAAGTAAAAGGGGGCGTGATCGCTCTCAATCTCCATACATCCATCAACCAATCACAATAGTTTTTAAGTTTAGTCTTCGTCAACCGAACCTCTCCCGTACGAGCATCATGAGTTTCTTCTTGCCCTTGTAGATCTGTTTGAGGTTGTCTATGAACTGGGTAAACTGGATGTGTCCGTCCTGGGCCATGAGGAACGTCTCTCTGGCCTTACTGAGGAACTCGATGAACTCGCTGTAGTGGCGCGGGCTGATGTGCGTGAGGCGAGAGTGCGTGGTGTTGATGTAGGCTCCGATGGTGGCGTCCAGCAGTTGCCTGAGTGGAGCCTTGTCCAGCGACATCAGCTTCCCAGAGTTCCTGCGGCTGTGCAGTGCCACCATGCCCGGCGTGGTCAATGTGCACCGTCTCAAAatgtctgacagcacagtggcgCACTTCACACTTTTCACCACCAGGGGAATGACGGCAGCCAGCTCATTCTTCCCCAGAGAGTGACTCAGAGCACAGGCCCACAGCACGTCATTGATAGCCGGGTGGGTGTCCTGGTTGTAGCTGAGGTTAAGGTGGGCCATGGCTAGCGTGGCCAGCTTGTAAGCCCTCATGGGATATCCTCTGTGCTCCATGTACCTGGCTATTGTAAAGAGCTGTGTGTAGCTCATCCCCGTGACGGCCGCGTCCAGAACGATCTGGTAGGCCGTCTCGAAGGCGATGTGGTCCTTCTCACAGAGGGTGAGGGCAGAGAGGGAACAGTTCTGGGGGTCCTTCATGGCACACTGCAGGGCCAGTGTTCGGGCGGAGGAGGCCAGGTTCTCCTGCTGGTGACAGTCCAGGTGCAGCCGGACGATGGTGGTGTTGGACATGACGGTGGTGGCCACGATGCTGGTGGCCTCGGTCGGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1188747 lncRNA downstream 53635 16792214 ~ 16805207 (-) False G1043143
TU1188749 lncRNA downstream 53635 16796886 ~ 16805207 (-) True G1043143
TU1188692 lncRNA downstream 81264 16777303 ~ 16777578 (-) True G1043099
TU1188684 lncRNA downstream 88039 16770601 ~ 16770803 (-) True G1043091
TU1188660 lncRNA downstream 127186 16726131 ~ 16731656 (-) True G1043067
TU1188835 lncRNA upstream 20142 16882734 ~ 16883407 (-) True G1043218
TU1189153 lncRNA upstream 52734 16915326 ~ 16915671 (-) True G1043482
TU1189159 lncRNA upstream 60911 16923503 ~ 16925143 (-) True G1043488
TU1189192 lncRNA upstream 138455 17001047 ~ 17002690 (-) True G1043515
TU1189142 lncRNA upstream 140599 17003191 ~ 17007766 (-) True LOC110537074
NM_001165148.2 mRNA downstream 219891 16637490 ~ 16638951 (-) False LOC100305243
XM_036937051.1 mRNA downstream 228722 16616367 ~ 16630120 (-) True LOC110537069
XM_036937054.1 mRNA downstream 228725 16616367 ~ 16630117 (-) False LOC110537069
XM_036937052.1 mRNA downstream 233145 16616367 ~ 16625697 (-) False LOC110537069
XM_036937046.1 mRNA downstream 281995 16569486 ~ 16576847 (-) True LOC110537062
XM_036937061.1 mRNA upstream 77835 16940427 ~ 17024994 (-) False LOC110537074
XM_036937058.1 mRNA upstream 77835 16940427 ~ 17025001 (-) False LOC110537074
XM_036937059.1 mRNA upstream 77835 16940427 ~ 17025002 (-) False LOC110537074
XM_036937060.1 mRNA upstream 77835 16940427 ~ 17041905 (-) False LOC110537074
XM_036937062.1 mRNA upstream 179779 17042371 ~ 17064591 (-) True LOC110537073
TU1188573 other downstream 314116 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 530728 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 530728 16324963 ~ 16328114 (-) True LOC110537059
TU1187996 other downstream 753959 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2547790 14307600 ~ 14311052 (-) True G1040432
TU1189216 other upstream 202729 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 202729 17065321 ~ 17067128 (-) True LOC110537077
TU1190341 other upstream 833537 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 1155512 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 1193519 18056111 ~ 18058392 (-) True G1044671

Expression Profile