RNA id: TU1188835


Basic Information

Item Value
RNA id TU1188835
length 572
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1043218
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16882734 ~ 16883407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAGGTGGATATTCAAGTGATAAGGAGTTATAGACCAGGTGGATATTCATGTGATAAGGAGTTATAGACCAGGTGGATATTCATGTGATAAGGAGTTACAGACCAGGTGGATATTCATGTGATCAGGAGTTATAGACCAGGTGGATATTCATGTGATAAGGAGTTATAGACCAGGTGGATATTCATGTGATAAGGAGTTATAGACCAGGTGGATATTCATGTGATCAGGAGTTATAGACCAGGTGGATATTCACATGATCAGGAGTTATAGACCAGGTGGATATTCATGTGATAAGGAGTTATAGACCAGGTGGATATTCACATGATCAGGAGTTATAGACCAGGTGGATATTCATGTGATAAGGAGTTATAGACCAGGTGGATATTCATATGATCAGGCGTTATAGACCAGGTGGATATTCATGTGATAAGGAGTTATAGACCAGGTGGATATTCATATGATAAGGAGTTATAGACCAGGTGGATATTCATGTGATAAGGAGTCATAGACCAGGTGGGCACCACACTCAAACCCTCTAGTTATACATTCCTGCTGGTTTCTGTCTCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1188776 lncRNA downstream 20142 16858842 ~ 16862592 (-) True G1043166
TU1188747 lncRNA downstream 77527 16792214 ~ 16805207 (-) False G1043143
TU1188749 lncRNA downstream 77527 16796886 ~ 16805207 (-) True G1043143
TU1188692 lncRNA downstream 105156 16777303 ~ 16777578 (-) True G1043099
TU1188684 lncRNA downstream 111931 16770601 ~ 16770803 (-) True G1043091
TU1189153 lncRNA upstream 31919 16915326 ~ 16915671 (-) True G1043482
TU1189159 lncRNA upstream 40096 16923503 ~ 16925143 (-) True G1043488
TU1189192 lncRNA upstream 117640 17001047 ~ 17002690 (-) True G1043515
TU1189142 lncRNA upstream 119784 17003191 ~ 17007766 (-) True LOC110537074
TU1189234 lncRNA upstream 170173 17053580 ~ 17054356 (-) True G1043548
NM_001165148.2 mRNA downstream 243783 16637490 ~ 16638951 (-) False LOC100305243
XM_036937051.1 mRNA downstream 252614 16616367 ~ 16630120 (-) True LOC110537069
XM_036937054.1 mRNA downstream 252617 16616367 ~ 16630117 (-) False LOC110537069
XM_036937052.1 mRNA downstream 257037 16616367 ~ 16625697 (-) False LOC110537069
XM_036937046.1 mRNA downstream 305887 16569486 ~ 16576847 (-) True LOC110537062
XM_036937061.1 mRNA upstream 57020 16940427 ~ 17024994 (-) False LOC110537074
XM_036937058.1 mRNA upstream 57020 16940427 ~ 17025001 (-) False LOC110537074
XM_036937059.1 mRNA upstream 57020 16940427 ~ 17025002 (-) False LOC110537074
XM_036937060.1 mRNA upstream 57020 16940427 ~ 17041905 (-) False LOC110537074
XM_036937062.1 mRNA upstream 158964 17042371 ~ 17064591 (-) True LOC110537073
TU1188573 other downstream 338008 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 554620 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 554620 16324963 ~ 16328114 (-) True LOC110537059
TU1187996 other downstream 777851 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2571682 14307600 ~ 14311052 (-) True G1040432
TU1189216 other upstream 181914 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 181914 17065321 ~ 17067128 (-) True LOC110537077
TU1190341 other upstream 812722 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 1134697 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 1172704 18056111 ~ 18058392 (-) True G1044671

Expression Profile