RNA id: TU1189336


Basic Information

Item Value
RNA id TU1189336
length 1361
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1043636
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17244807 ~ 17246167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaggttgcaagatcgaatcccgagttgacaaggtaaaaatctgtcattctgcccctgaacaaggcagttaacccaccattcctaggccgtcattgaaaataagagtgtgctcttaactgacttgcctagttaaataaaggtaaaaaaataaaataaaaatgtcggCCACAATCGGTGTCtaaaaatgcagattaccaattgctatgaaaacttgaaatcagccctaattaattggccattccgattaatcgttCTACCTCTAGTTTGTATCAAGATGCCTAACACtgtgaagatgcaaaatatttttttattgtgaaacaaacacgaaataagacaaaaaaacagtcAATACTTCGTAGAGCCAccgtttgcagcaattacagctgcaagtctcttggggtatcaaatcaaatcacaaatcaaatgtatttatatagcttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaaagcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgctgggtggagattataacagaacatggctaagGTGTTcgaatgttcataaatgaccagcatggtccaataataataaggcagaacagttgaaactggagcagcagcacggccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctgaggcatggtcctagggctcaggtcctccgagagagagaaagaaagatggaattagagagagcacacttaaattcacacaggacaccgaataagacaggagaagtactccagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatctgaggacacccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaatcctgagtatagcccacaaagatctccgccacggcacaacccaaggggggggggggggggggcgccaacccagacaggaagatcacatcagtgactcaacccactcaagtgacgcacccctcccagggacggtatgaaagagccccagtaagccagtgactcagcccctgtaatagggttagaggcagagaatcccagtggaacgaggggaaccggccaggcagagacagcaagggcggttcgttgctccagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1189330 lncRNA downstream 1047 17243497 ~ 17243760 (-) True G1043633
TU1189260 lncRNA downstream 4916 17236467 ~ 17239891 (-) True G1043567
TU1189286 lncRNA downstream 77486 17166815 ~ 17167321 (-) True G1043589
TU1189281 lncRNA downstream 88432 17155952 ~ 17156375 (-) True G1043584
TU1189271 lncRNA downstream 105334 17139171 ~ 17139473 (-) True G1043577
TU1189335 lncRNA upstream 1354 17247521 ~ 17248292 (-) True G1043635
TU1189340 lncRNA upstream 12401 17258568 ~ 17258888 (-) True G1043640
TU1189354 lncRNA upstream 37658 17283825 ~ 17284118 (-) True G1043654
TU1189343 lncRNA upstream 42418 17288585 ~ 17288920 (-) True G1043643
TU1189371 lncRNA upstream 81796 17327963 ~ 17328188 (-) True G1043671
LOC110537083 mRNA downstream 64321 17179487 ~ 17180486 (-) True LOC110537083
XM_036939648.1 mRNA downstream 106833 17135946 ~ 17137974 (-) False LOC118937877
XR_005035291.1 mRNA downstream 106833 17135946 ~ 17137974 (-) True LOC118937877
XM_021622839.2 mRNA downstream 115628 17113455 ~ 17129179 (-) True LOC110537079
XM_021622841.2 mRNA downstream 115629 17111763 ~ 17129178 (-) False LOC110537079
XM_021622851.2 mRNA upstream 3905 17250072 ~ 17256274 (-) True LOC110537086
XM_021622852.2 mRNA upstream 23510 17269677 ~ 17275098 (-) True ddx55
XM_021622855.1 mRNA upstream 29079 17275246 ~ 17279138 (-) False LOC110537089
XM_021622856.1 mRNA upstream 29079 17275246 ~ 17279138 (-) True LOC110537089
XM_036937081.1 mRNA upstream 256037 17502204 ~ 17524387 (-) False LOC110537091
TU1189216 other downstream 176922 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 177679 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 700081 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 916693 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 916693 16324963 ~ 16328114 (-) True LOC110537059
TU1190341 other upstream 449962 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 771937 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 809944 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 851396 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 851485 18097652 ~ 18099722 (-) True G1044692

Expression Profile