RNA id: TU1190377


Basic Information

Item Value
RNA id TU1190377
length 229
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1044516
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17735886 ~ 17736114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaagaatgggaaataatttcagtctctcgatgtgcaaaactgatagagacattccCCAAACGACTGTaatcgctacaaagtattaacttaagggggctggataattttgcacgcccaatttttcagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190374 lncRNA downstream 3819 17730903 ~ 17732067 (-) True G1044513
TU1190373 lncRNA downstream 4246 17730903 ~ 17731640 (-) False G1044513
TU1190372 lncRNA downstream 4721 17729503 ~ 17731165 (-) False G1044513
TU1190347 lncRNA downstream 29345 17706263 ~ 17706541 (-) True G1044488
TU1190345 lncRNA downstream 32308 17703165 ~ 17703578 (-) True G1044486
TU1190378 lncRNA upstream 259 17736373 ~ 17736643 (-) True G1044517
TU1190387 lncRNA upstream 8886 17745000 ~ 17745200 (-) True G1044526
TU1190359 lncRNA upstream 16080 17752194 ~ 17752956 (-) True G1044500
TU1190396 lncRNA upstream 24334 17760448 ~ 17760670 (-) True G1044534
TU1190397 lncRNA upstream 24772 17760886 ~ 17761173 (-) True G1044535
XM_021622871.2 mRNA downstream 6642 17721177 ~ 17729244 (-) True LOC110537102
XM_021622869.2 mRNA downstream 25649 17681785 ~ 17710237 (-) True LOC110537100
XM_036937085.1 mRNA downstream 159349 17557135 ~ 17576537 (-) False LOC110537096
XM_036937086.1 mRNA downstream 159349 17557135 ~ 17576537 (-) True LOC110537096
XM_036937084.1 mRNA downstream 211499 17502204 ~ 17524387 (-) True LOC110537091
XM_036937092.1 mRNA upstream 17849 17753963 ~ 17808512 (-) False LOC110536806
XM_036937093.1 mRNA upstream 17849 17753963 ~ 17808512 (-) False LOC110536806
XM_036937094.1 mRNA upstream 19822 17755936 ~ 17808512 (-) True LOC110536806
XM_021622888.2 mRNA upstream 123986 17860100 ~ 17863387 (-) True LOC110537108
XM_036937101.1 mRNA upstream 155780 17891894 ~ 17912969 (-) False LOC110537109
TU1190341 other downstream 38781 17696129 ~ 17697105 (-) True G1044482
TU1189216 other downstream 668001 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 668758 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 1191160 16533617 ~ 16544726 (-) True LOC110537061
TU1188178 other downstream 1407772 16324963 ~ 16328114 (-) True LOC110537059
TU1190533 other upstream 281990 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 319997 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 361449 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 361538 18097652 ~ 18099722 (-) True G1044692
TU1190652 other upstream 456120 18192234 ~ 18193223 (-) True G1044761

Expression Profile