RNA id: TU1190429


Basic Information

Item Value
RNA id TU1190429
length 463
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1044559
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17828858 ~ 17829320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgagggatgaaaattatgtggatgcaacatctcaagacatcagttaaagcttggccgcaaatgggtcttccaaatggacaatgaccccaagtatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaagatattggagtggccatcgctaagccctgacctcaatcccatagaaaatctgtgggcagaactgaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagttacacaagctctgtcagaaggaatgggccaacattcacctaacttattgtgggaagcttgtggaggaatacctatgtgagaatgctgttcatcgactacagctcaggatttaacaccatagtaccctccaaactcgtcatcaagctcaagaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190428 lncRNA downstream 113 17828467 ~ 17828745 (-) True G1044558
TU1190425 lncRNA downstream 6975 17816159 ~ 17821883 (-) True G1044555
TU1190421 lncRNA downstream 13651 17814974 ~ 17815207 (-) True G1044553
TU1190420 lncRNA downstream 15115 17813470 ~ 17813743 (-) True G1044552
TU1190406 lncRNA downstream 51956 17776409 ~ 17776902 (-) True G1044539
TU1190462 lncRNA upstream 96500 17925820 ~ 17926330 (-) True G1044592
TU1190466 lncRNA upstream 100535 17929855 ~ 17930090 (-) True G1044596
TU1190475 lncRNA upstream 117964 17947284 ~ 17947534 (-) True G1044604
TU1190499 lncRNA upstream 141270 17970590 ~ 17970854 (-) True G1044619
TU1190500 lncRNA upstream 142658 17971978 ~ 17972434 (-) True G1044620
XM_036937092.1 mRNA downstream 20346 17753963 ~ 17808512 (-) False LOC110536806
XM_036937093.1 mRNA downstream 20346 17753963 ~ 17808512 (-) False LOC110536806
XM_036937094.1 mRNA downstream 20346 17755936 ~ 17808512 (-) True LOC110536806
XM_021622871.2 mRNA downstream 99614 17721177 ~ 17729244 (-) True LOC110537102
XM_021622869.2 mRNA downstream 118621 17681785 ~ 17710237 (-) True LOC110537100
XM_021622888.2 mRNA upstream 30780 17860100 ~ 17863387 (-) True LOC110537108
XM_036937101.1 mRNA upstream 62574 17891894 ~ 17912969 (-) False LOC110537109
XM_036937102.1 mRNA upstream 62574 17891894 ~ 17912969 (-) False LOC110537109
XM_036937104.1 mRNA upstream 62574 17891894 ~ 17912969 (-) True LOC110537109
NM_001124267.1 mRNA upstream 106408 17935728 ~ 17940707 (-) True LOC100135895
TU1190341 other downstream 131753 17696129 ~ 17697105 (-) True G1044482
TU1189216 other downstream 760973 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 761730 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 1284132 16533617 ~ 16544726 (-) True LOC110537061
TU1188178 other downstream 1500744 16324963 ~ 16328114 (-) True LOC110537059
TU1190533 other upstream 188784 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 226791 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 268243 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 268332 18097652 ~ 18099722 (-) True G1044692
TU1190652 other upstream 362914 18192234 ~ 18193223 (-) True G1044761

Expression Profile