RNA id: TU1190550


Basic Information

Item Value
RNA id TU1190550
length 1425
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G1044666
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18048606 ~ 18052855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAAGAAAGTCTTATCATGGGGGCAATCTCTGGGGTTTCAACCTCATCTTATGGGGCTGGGACTTGTCTCTACCTAAAGATGGCCCTCTGGCTCAGGTCTGCCCAGAAGATCCTCTGCTGGGTGAAGTCTGCATCCAGTGCCACTGTGTTCCGCAGCTGCTCCACAATCTGGGTGTACTCCCTCCGCTCCAGACCCAGCTTCCGGATGTCCCGGCGGTTAGTGAAGATAAGACAGGGTTCCTTGCCCACAGCCTTGCACACTCCTGTGGTGGGGTCCATCTGGTAGCTGTTGTGGCACTCGCACTTATAACCTCCCTTCAGGTTGATACAAATCTGACTACAGATCCCAGGGTTCATACATTCATTGATGTCTGCAAGGAGAGTGGGAAAAACAGGAAGTCACCCAAACAGTAGGAAGTCAAAATGAAGACACTTTGGTGAATACTAAGTCAAATGTAAAcagtggttgaaaaagtacccaataGTGATACTTAAGTGAAAGTACAGATACCTTAAttgaaagttactcaagtaaaaagtGAGTCACCCATTAAAATAGTTGGTTCTAAAACATACATAAGTATCTATAGTAAAATAATAAATCACTTcatattccttatattaagcaaagcagacagcaccatgttattgtttttaaaaagtacagatagccagaggcacactccaacacagacattatttacaattaAGCATGTGTTTtttgagtccgtcagatcagaggcagtagggatcttgataagtgtgttaattggaccgttttcctgtcctgctaagcattcaacatgtaacaagtacttttgggtgtcaggggaagtgtatggagtaaaaagtacatcaatgctttaggaatgtagtgaactaaaagtaaaagtacagatacccccaaaaaactacttaattaGTACTTTACACCCCTCTGTAAGAGAGACAACaaactgggtggattatcttCAAGTCTCAATATCCCAATGCAAAAGCCTTTCTTTTGTATGAGAGTTCATATTGATTAGTgttaatcattgtgtgtgtgtgtgtgtgtgtgtgtatatatataacacCTACCGCCACAGGTCTTGCGGTCTATGAGCTGCAGTCCAGGGGTGCAGTCACACTCGAAGCCAATCACCATGTCCCTGCAGATGTGGGAGCAGCCTCCATTGTTCAGCAGACACTCATTCAGGTCTAAAATGCACTCATTGATGGGCTCGTCGCTCCAGTCTGGACAGTCCCGGGCCTTGTTGCACACTTTACTCATCTCTATACACTCTCCACTCCGACACTTGAATTTGTCAGGGCCATTGCACTGTGTCACTGGGTTGTGAAAGAAAGTGGCATTACAAAGTGGTGATAATGGAATGTTACAAAGAGGAACAGTGGAATAACAGAAGTTGGTGTAGGAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190532 lncRNA downstream 26301 18021572 ~ 18022305 (-) True G1044648
TU1190531 lncRNA downstream 31189 18017196 ~ 18017417 (-) True G1044647
TU1190502 lncRNA downstream 36141 17972617 ~ 18012465 (-) False G1044621
TU1190503 lncRNA downstream 36141 17972617 ~ 18012465 (-) False G1044621
TU1190504 lncRNA downstream 41490 17972617 ~ 18007116 (-) True G1044621
TU1190565 lncRNA upstream 19242 18072097 ~ 18072807 (-) True G1044678
TU1190604 lncRNA upstream 78340 18131195 ~ 18132786 (-) True G1044714
TU1190624 lncRNA upstream 105290 18158145 ~ 18158358 (-) True G1044734
TU1190637 lncRNA upstream 124958 18177813 ~ 18178053 (-) True G1044747
TU1190638 lncRNA upstream 126249 18179104 ~ 18179386 (-) True G1044748
XM_036938892.1 mRNA downstream 84541 17961976 ~ 17964065 (-) True LOC118937764
NM_001124267.1 mRNA downstream 107899 17935728 ~ 17940707 (-) True LOC100135895
XM_036937101.1 mRNA downstream 135637 17891894 ~ 17912969 (-) False LOC110537109
XM_021622897.2 mRNA upstream 16795 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA upstream 16795 18069650 ~ 18078764 (-) False LOC110537114
XM_036937108.1 mRNA upstream 16795 18069650 ~ 18079512 (-) True LOC110537114
LOC110537117 mRNA upstream 47178 18100033 ~ 18100881 (-) True LOC110537117
XM_021622903.2 mRNA upstream 237115 18289970 ~ 18297738 (-) False LOC110537118
TU1190533 other downstream 29848 18018104 ~ 18018758 (-) True G1044649
TU1190341 other downstream 351501 17696129 ~ 17697105 (-) True G1044482
TU1189216 other downstream 980721 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 981478 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 1503880 16533617 ~ 16544726 (-) True LOC110537061
TU1190557 other upstream 3256 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 44708 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 44797 18097652 ~ 18099722 (-) True G1044692
TU1190652 other upstream 139379 18192234 ~ 18193223 (-) True G1044761
TU1190787 other upstream 393826 18446681 ~ 18447251 (-) True LOC110537121

Expression Profile