RNA id: TU1190580


Basic Information

Item Value
RNA id TU1190580
length 2037
RNA type TUCP
GC content 0.38
exon number 2
gene id G1044692
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18097563 ~ 18099722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCAGAAAAACAGTGTAAGTTCAGGACAACCTTACCAGACCTTTAATTGCAGTTACATGTTCAGGTCATGGGATAATTTCTTACTCGTCATCTTTTTGATATGCAGTGTTCACACTGCTCTTAACCTTTTACAGTGTTGTGAGAAATAGTTCAGATATGTCACGATCTCTTCAGTGATATCATGACGACAACAACATGATTGGTGTAATCACTGCTACCACTCCACTCCTGTGACACTCAGATATTCTCTAGCACATTGGAACACTGTGAATATGACACTAACACACACGGAACGATCCAGATCCTATTAAATCACTATTATAATTCCTAATTCTTTGcacataacatactgtacatacacataacctgtttgtgcacattttgtttaaCTACATTTCTCTAACCACCCTAACAACCTTTTAACTACATTACTCTTAACACCATTTTGTTTAACTACATTACTCTAACACCATTTTGTTTAACTACATTACTCTAACTACCCTACAACCTTTTAACTACATTACTCTAACTACTCTAACAACCTTTTAACTACATTACTCTAACTACCCTAACAACCTTTTTACTACATTACTCTAACGCCATTTTGTTTAACTACATTACTCTAACACCATTTTGTTTAACTACATTACTCTAACTACCCTAACAACCTTTTAACTACATTACTCTAACACCATTTTGTTTAACTACATTACTCTAACTACCCTACAACCTTTTAACTACATTACTCTAACTACCCTAACAACCTTTTAACTACATTACTCTAACTACCCTAACAACCTTTTAACTACATTACTCTAACACCATTTTGTTTAACTACATTACTCTAACTACCCTAACAATCTTTTAACTACATTACTCTAACACCATTTTGTTTAACTACATTACTCTTCATGAAATCAAACTGTCTTTTGATCCACTATTTGATTTTCATGGCATCTATTGAAATGGAAAGTTTACCAGGCCAGAGCATACCCATCATACCAACTCAGGGACATGATTTAAATGGAAAAATATTAATTAACCAAATGCAACATACTGAAATACTGGTTTGTATAACGAAATTACATCAAACAAGGCaaaacattgtaaaaaataaaataataataatacatttattgAATTTGCATAAACATTGGCTTTACATTCCATGCCATTGAGAATTATTGACGTTGCATTTATCAAATTTGACAAGGAGCAATTTACCCGAGATAATTCACTGATGTCTGTACTGACTAGTATTCATGGGAGTTGTATATTATTGTCCAGCCATAAAGTTAATGGTATTAGTTATATCATGATACAGTGTCATCATAATCAGTCCTTCTTGGGCTCTGCCTCTACAGCAGTGCTCTCAGCTGCAGCGCCGGGTGAGGTTATGGCAGGTAAGCAAGTGATAGGAACCACTCTCTCATTGCCTTCTGTCACAGCAACCACTTTTGGAGCCTGGATCTGTAGCTGTCCATCATTCAAAGAGCAGGTGACAGTCTCAGGATTCACGCCTTCAGGCAGATCAAACTCCTGTTTAAACTCCTGGCATCTGTAAGAGTAGGAGCCCTTTCCATCATCCTGCTTCTTCTCTGTCTTTCCACTGACTCTCAGCTTCCTGCCCACCTGCTTGACAGACAGCTCCTCTGGGGAGAAGTCTTTAGTGTCCAGTGTCAGTGCAAAACGGTTGTTTTCTTTTCCCATCTGGAAAGAGATGGGCTTGAAGTCAGTTGAAGATAATGGGCCTTCAATGTCTTCAAAAATCTTTTGGTGCAATCGTTGCATATATTCCATATTGTGCCTCATCTCCTGCATATTTCGCATAATTTCCTGCTCCATCTGGAAGAAGAGAGGCCGTGTCTCTGGCCAGAGACTGCGAACGGGCCAGTGGAAGTCCATGAAGGGGCTCATTGGGCTCATTGGATTGAGGGAAGGCTGCATCATGCTGGGGCAAAGCATCTTCAAATCAACTCTGTCTGTGTCGTTTCTGCTGGTCTCCGTTGGTCTCGTCTCTGAGTGTGTTTCTGAGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190565 lncRNA downstream 24845 18072097 ~ 18072807 (-) True G1044678
TU1190550 lncRNA downstream 44797 18048606 ~ 18052855 (-) True G1044666
TU1190532 lncRNA downstream 75347 18021572 ~ 18022305 (-) True G1044648
TU1190531 lncRNA downstream 80235 18017196 ~ 18017417 (-) True G1044647
TU1190504 lncRNA downstream 90536 17972617 ~ 18007116 (-) True G1044621
TU1190604 lncRNA upstream 31473 18131195 ~ 18132786 (-) True G1044714
TU1190624 lncRNA upstream 58423 18158145 ~ 18158358 (-) True G1044734
TU1190637 lncRNA upstream 78091 18177813 ~ 18178053 (-) True G1044747
TU1190638 lncRNA upstream 79382 18179104 ~ 18179386 (-) True G1044748
TU1190640 lncRNA upstream 80382 18180104 ~ 18180377 (-) True G1044750
XM_036937108.1 mRNA downstream 18140 18069650 ~ 18079512 (-) True LOC110537114
XM_021622897.2 mRNA downstream 18888 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA downstream 18888 18069650 ~ 18078764 (-) False LOC110537114
XM_036938892.1 mRNA downstream 133587 17961976 ~ 17964065 (-) True LOC118937764
NM_001124267.1 mRNA downstream 156945 17935728 ~ 17940707 (-) True LOC100135895
LOC110537117 mRNA upstream 311 18100033 ~ 18100881 (-) True LOC110537117
XM_021622903.2 mRNA upstream 190248 18289970 ~ 18297738 (-) False LOC110537118
XM_021622904.2 mRNA upstream 237129 18336851 ~ 18387111 (-) False LOC110537119
XM_036937111.1 mRNA upstream 237129 18336851 ~ 18387113 (-) True LOC110537119
XM_021622906.2 mRNA upstream 340037 18439759 ~ 18458056 (-) False LOC110537121
TU1190557 other downstream 39260 18056111 ~ 18058392 (-) True G1044671
TU1190533 other downstream 78894 18018104 ~ 18018758 (-) True G1044649
TU1190341 other downstream 400547 17696129 ~ 17697105 (-) True G1044482
TU1189216 other downstream 1029767 17065321 ~ 17067885 (-) False LOC110537077
TU1190652 other upstream 92512 18192234 ~ 18193223 (-) True G1044761
TU1190787 other upstream 346959 18446681 ~ 18447251 (-) True LOC110537121
TU1191128 other upstream 714180 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 760140 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 760140 18859862 ~ 18868059 (-) True LOC110537130

Expression Profile