RNA id: TU1190644


Basic Information

Item Value
RNA id TU1190644
length 240
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1044754
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18182807 ~ 18183046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatgtgatgaaagaatgcactgcgcatgtgatggaagaatgcactgcgcatgtgatggaagaatgcactgtgcatgtgatggaagaatgcactgtgcatgtgatggaagaatgcactgtgcatgtgatggaagaatgcatgtgatggaagaatgcactgcgcatgtgatggaagaatgcactgtgcatgtgatggaagaatgcactgtgcatgtgatggaagaatgcatgtgatggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190643 lncRNA downstream 551 18181979 ~ 18182256 (-) True G1044753
TU1190640 lncRNA downstream 2430 18180104 ~ 18180377 (-) True G1044750
TU1190638 lncRNA downstream 3421 18179104 ~ 18179386 (-) True G1044748
TU1190637 lncRNA downstream 4754 18177813 ~ 18178053 (-) True G1044747
TU1190624 lncRNA downstream 24449 18158145 ~ 18158358 (-) True G1044734
TU1190645 lncRNA upstream 398 18183444 ~ 18183646 (-) True G1044755
TU1190647 lncRNA upstream 1041 18184087 ~ 18184362 (-) True G1044757
TU1190646 lncRNA upstream 2406 18185452 ~ 18185802 (-) True G1044756
TU1190651 lncRNA upstream 8592 18191638 ~ 18191987 (-) True G1044760
TU1190653 lncRNA upstream 10672 18193718 ~ 18193953 (-) True G1044762
LOC110537117 mRNA downstream 81926 18100033 ~ 18100881 (-) True LOC110537117
XM_036937108.1 mRNA downstream 103295 18069650 ~ 18079512 (-) True LOC110537114
XM_021622897.2 mRNA downstream 104043 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA downstream 104043 18069650 ~ 18078764 (-) False LOC110537114
XM_036938892.1 mRNA downstream 218742 17961976 ~ 17964065 (-) True LOC118937764
XM_021622903.2 mRNA upstream 106924 18289970 ~ 18297738 (-) False LOC110537118
XM_021622904.2 mRNA upstream 153805 18336851 ~ 18387111 (-) False LOC110537119
XM_036937111.1 mRNA upstream 153805 18336851 ~ 18387113 (-) True LOC110537119
XM_021622906.2 mRNA upstream 256713 18439759 ~ 18458056 (-) False LOC110537121
XM_021622907.2 mRNA upstream 256959 18440005 ~ 18458056 (-) False LOC110537121
TU1190582 other downstream 83085 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 83085 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 124415 18056111 ~ 18058392 (-) True G1044671
TU1190533 other downstream 164049 18018104 ~ 18018758 (-) True G1044649
TU1190341 other downstream 485702 17696129 ~ 17697105 (-) True G1044482
TU1190652 other upstream 9188 18192234 ~ 18193223 (-) True G1044761
TU1190787 other upstream 263635 18446681 ~ 18447251 (-) True LOC110537121
TU1191128 other upstream 630856 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 676816 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 676816 18859862 ~ 18868059 (-) True LOC110537130

Expression Profile