RNA id: TU1190653


Basic Information

Item Value
RNA id TU1190653
length 236
lncRNA type intronic
GC content 0.55
exon number 1
gene id G1044762
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18193718 ~ 18193953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctctctctctctttctgtgtctctgcctctctctctcgctctgtgtctctgcctctctctctcgctctgtgtctctgcctctctcgctctgtgtctctgcctctctcgctctgtgtctctgcctctctcgctctgtgtgtctctctctgtgtgtctctctctctctgtgtctctctctctctgtgtctctgcctctctctctctctctctgtgtctctgcctctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190651 lncRNA downstream 1731 18191638 ~ 18191987 (-) True G1044760
TU1190646 lncRNA downstream 7916 18185452 ~ 18185802 (-) True G1044756
TU1190647 lncRNA downstream 9356 18184087 ~ 18184362 (-) True G1044757
TU1190645 lncRNA downstream 10072 18183444 ~ 18183646 (-) True G1044755
TU1190644 lncRNA downstream 10672 18182807 ~ 18183046 (-) True G1044754
TU1190654 lncRNA upstream 73 18194026 ~ 18194917 (-) True G1044763
TU1190655 lncRNA upstream 1044 18194997 ~ 18195431 (-) True G1044764
TU1190671 lncRNA upstream 16916 18210869 ~ 18211206 (-) True G1044780
TU1190699 lncRNA upstream 61249 18255202 ~ 18257887 (-) True G1044804
TU1190700 lncRNA upstream 64078 18258031 ~ 18265283 (-) False G1044805
LOC110537117 mRNA downstream 92837 18100033 ~ 18100881 (-) True LOC110537117
XM_036937108.1 mRNA downstream 114206 18069650 ~ 18079512 (-) True LOC110537114
XM_021622897.2 mRNA downstream 114954 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA downstream 114954 18069650 ~ 18078764 (-) False LOC110537114
XM_036938892.1 mRNA downstream 229653 17961976 ~ 17964065 (-) True LOC118937764
XM_021622903.2 mRNA upstream 96017 18289970 ~ 18297738 (-) False LOC110537118
XM_021622904.2 mRNA upstream 142898 18336851 ~ 18387111 (-) False LOC110537119
XM_036937111.1 mRNA upstream 142898 18336851 ~ 18387113 (-) True LOC110537119
XM_021622906.2 mRNA upstream 245806 18439759 ~ 18458056 (-) False LOC110537121
XM_021622907.2 mRNA upstream 246052 18440005 ~ 18458056 (-) False LOC110537121
TU1190652 other downstream 495 18192234 ~ 18193223 (-) True G1044761
TU1190582 other downstream 93996 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 93996 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 135326 18056111 ~ 18058392 (-) True G1044671
TU1190533 other downstream 174960 18018104 ~ 18018758 (-) True G1044649
TU1190787 other upstream 252728 18446681 ~ 18447251 (-) True LOC110537121
TU1191128 other upstream 619949 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 665909 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 665909 18859862 ~ 18868059 (-) True LOC110537130
TU1192375 other upstream 1362325 19556278 ~ 19558669 (-) True LOC110537144

Expression Profile