RNA id: TU1190700


Basic Information

Item Value
RNA id TU1190700
length 1333
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1044805
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18258031 ~ 18271149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTTATGTACTTTATTAATACTTCTTTACAACACTGAGGAGTGTTACATTATTCTCCAAATCAGCTGTGGGACATGATAGTCAGTGTTTCATTCATTACTGGATCTTTTCAGCACcagaaaaacaaaataaaatggtaaaaaaaaacaagataagAACTGTAGTAGGAAGTAAGTAAGAGGCATTGAGGCTCTCTCCAGGTGTTGGTCTGAAGAGAAGAGTGGAGATTAAATGAAAATTCCACTcaaactatcttttggtattgTTTCATTAGTCGCTTCATACTGGGACAcattctgtattttgaaagttctatatcttgaaaacttgattgctgacatgcaaaactaTCAACAGcagactaatgaaacaaataccaaaatatagtttgaGTCGTGTTTTCCTTTAAGACCAGGATTCAGTCCCAAATAgccccatattccctatatagtgcattacttttgaccaggaccagtaGGGAAcccgtcaaaagtagtgcactatatagggaatagggtggtatttgGGACTTACGCAGGTTGTAGTAAATGGATGGGTTAACATCCCGGTCAAAGCGCAGACAGTTCTGGAGCTGGTATCTGAAACAGCAAGGATGGCAGAGTACCACACCAGTAGATGCAGATAGAGCCCAGCTAGTGAGAGTgaggagacacagggagacagtgTCCTCCAATACTGACTACAGGATGTGACAATCAAACCAGCCATTGCTTCAAACTGTTAAAAACCAGTAGGAAGCAAGACAAGTTATTGTTTACTTCTCAAAGAGGACACAGAGCAGAGGGATGAATGTGGAAGTGACCATGAAAGAGATCGGGAAAAACAGCTACAAAAATCCCTTTCATCCCcaccaaaaaacaaacaaataatttACAGTACTAATACAGCCCACTCTTCATCCGTTAACAACATGGTGAGCTTTACAAAGGCATCGTCTGCTACACACTACAATACTGGACATCTTTTTTTCAAcgttattttcaatacattttcaaataactTAAAAATCATTCCCGTTTAAAAGTGCAAATCCATTAAAATATGAGTTTGACTGGATGGGAAATGGTAATGAAAAGTCAGATGTTCAGTGTTTTCTTGTGCAAAGTAATGTTATATTAATAATAGTAAATGTCTCATAGCTTGCTTTACTTTCTCACATAACTCAATTTCACAATCTGAAACCTTTAGGGATTTCCCATCAGTTCCAGTAACAGAAAAGAaacccctaatggtcccagagagggaacccctaatggtcccagagagagggaacccctaatggtcccagagagagggaacccctaatggtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190699 lncRNA downstream 144 18255202 ~ 18257887 (-) True G1044804
TU1190671 lncRNA downstream 46825 18210869 ~ 18211206 (-) True G1044780
TU1190655 lncRNA downstream 62600 18194997 ~ 18195431 (-) True G1044764
TU1190654 lncRNA downstream 63114 18194026 ~ 18194917 (-) True G1044763
TU1190653 lncRNA downstream 64078 18193718 ~ 18193953 (-) True G1044762
TU1190710 lncRNA upstream 24713 18289996 ~ 18291592 (-) False LOC110537118
TU1190709 lncRNA upstream 25110 18290393 ~ 18291592 (-) False LOC110537118
TU1190711 lncRNA upstream 31834 18297117 ~ 18297534 (-) True LOC110537118
TU1190714 lncRNA upstream 34847 18300130 ~ 18300382 (-) True G1044812
TU1190720 lncRNA upstream 47302 18312585 ~ 18346515 (-) True G1044817
LOC110537117 mRNA downstream 157150 18100033 ~ 18100881 (-) True LOC110537117
XM_036937108.1 mRNA downstream 178519 18069650 ~ 18079512 (-) True LOC110537114
XM_021622897.2 mRNA downstream 179267 18069650 ~ 18078764 (-) False LOC110537114
XM_036937106.1 mRNA downstream 179267 18069650 ~ 18078764 (-) False LOC110537114
XM_036938892.1 mRNA downstream 293966 17961976 ~ 17964065 (-) True LOC118937764
XM_021622903.2 mRNA upstream 24687 18289970 ~ 18297738 (-) False LOC110537118
XM_021622904.2 mRNA upstream 71568 18336851 ~ 18387111 (-) False LOC110537119
XM_036937111.1 mRNA upstream 71568 18336851 ~ 18387113 (-) True LOC110537119
XM_021622906.2 mRNA upstream 174476 18439759 ~ 18458056 (-) False LOC110537121
XM_021622907.2 mRNA upstream 174722 18440005 ~ 18458056 (-) False LOC110537121
TU1190652 other downstream 64808 18192234 ~ 18193223 (-) True G1044761
TU1190582 other downstream 158309 18097563 ~ 18099722 (-) False G1044692
TU1190580 other downstream 158309 18097652 ~ 18099722 (-) True G1044692
TU1190557 other downstream 199639 18056111 ~ 18058392 (-) True G1044671
TU1190533 other downstream 239273 18018104 ~ 18018758 (-) True G1044649
TU1190787 other upstream 181398 18446681 ~ 18447251 (-) True LOC110537121
TU1191128 other upstream 548619 18813902 ~ 18815394 (-) True G1045201
TU1191233 other upstream 594579 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other upstream 594579 18859862 ~ 18868059 (-) True LOC110537130
TU1192375 other upstream 1290995 19556278 ~ 19558669 (-) True LOC110537144

Expression Profile