RNA id: TU1191382


Basic Information

Item Value
RNA id TU1191382
length 262
lncRNA type intronic
GC content 0.35
exon number 1
gene id G1045431
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18979116 ~ 18979377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgcaaagtcaccggatgttttggaatcaaaacattactgcacgtaacgcgccaatgtaaactgagattttttgatataaatatgcacattattgaacaaaacatacgtgtattgtgtagtatgatgtcctatgagtgtcatctgatgaagatcatcaaaggttagtgattcattttatctatatttctgctttttgtgactcctatctttggctggaaaatagctgtgtttttgtgacttgactctgacctaacataatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1191380 lncRNA downstream 1263 18977617 ~ 18977853 (-) True G1045429
TU1191378 lncRNA downstream 4490 18974389 ~ 18974626 (-) True G1045427
TU1191377 lncRNA downstream 6569 18972293 ~ 18972547 (-) True G1045426
TU1191358 lncRNA downstream 19541 18959259 ~ 18959575 (-) True G1045407
TU1191311 lncRNA downstream 44887 18934021 ~ 18934229 (-) True G1045365
TU1191384 lncRNA upstream 4596 18983973 ~ 18984225 (-) True G1045433
TU1191386 lncRNA upstream 4999 18984376 ~ 18984597 (-) True G1045435
TU1191399 lncRNA upstream 12827 18992204 ~ 18992424 (-) True G1045448
TU1191447 lncRNA upstream 52504 19031881 ~ 19032142 (-) True G1045495
TU1191600 lncRNA upstream 65397 19044774 ~ 19046324 (-) True LOC110539127
LOC110536808 mRNA downstream 29209 18938218 ~ 18949907 (-) True LOC110536808
XM_036939132.1 mRNA downstream 71739 18833119 ~ 18907377 (-) False LOC110537130
XM_021622926.2 mRNA downstream 232537 18723193 ~ 18746579 (-) True fgf10a
XM_021622924.2 mRNA downstream 413024 18560756 ~ 18566092 (-) True ccdc80l2
XR_005034901.1 mRNA downstream 421105 18545785 ~ 18558011 (-) True LOC118937637
XM_021626097.2 mRNA upstream 64747 19044124 ~ 19050623 (-) False LOC110539127
LOC110536810 mRNA upstream 86656 19066033 ~ 19077328 (-) False LOC110536810
XM_036937122.1 mRNA upstream 100277 19079654 ~ 19084979 (-) False LOC110537133
XM_036937121.1 mRNA upstream 100277 19079654 ~ 19085444 (-) True LOC110537133
XM_021622934.2 mRNA upstream 106975 19086352 ~ 19090080 (-) True abraxas1
TU1191233 other downstream 74010 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 111057 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 163722 18813902 ~ 18815394 (-) True G1045201
TU1190787 other downstream 531865 18446681 ~ 18447251 (-) True LOC110537121
TU1190652 other downstream 785893 18192234 ~ 18193223 (-) True G1044761
TU1192375 other upstream 576901 19556278 ~ 19558669 (-) True LOC110537144
TU1192719 other upstream 934462 19913839 ~ 19938505 (-) True LOC110536814
TU1193559 other upstream 1516188 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 1530239 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 1722163 20701540 ~ 20702040 (-) True G1047473

Expression Profile