RNA id: TU1192695



Basic Information


Item Value
RNA id TU1192695
length 247
lncRNA type intronic
GC content 0.50
exon number 1
gene id G1046540
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19875822 ~ 19876068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attaggaacaccttcctaatattgagttgcaccccccccttTTGCTctctgaacagcctcaattcgtcagagcatggactctacaaggtgtcgaaagcgttccacagggatgctggcgcatgttgacttcaatgcatagtgtcaagttggctggatggcctttgggtggtggaccctttttgatacacacggggaactgttgagcgtgaaaaccccagcagtgtggcagttcttgacacactcaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1192694 lncRNA downstream 903 19874464 ~ 19874919 (-) True G1046539
TU1192693 lncRNA downstream 2023 19873441 ~ 19873799 (-) True G1046538
TU1192692 lncRNA downstream 3001 19872552 ~ 19872821 (-) True G1046537
TU1192599 lncRNA downstream 19374 19856188 ~ 19856448 (-) True G1046456
TU1192581 lncRNA downstream 32529 19842889 ~ 19843293 (-) True G1046438
TU1192696 lncRNA upstream 184 19876252 ~ 19876478 (-) True G1046541
TU1192697 lncRNA upstream 480 19876548 ~ 19876784 (-) True G1046542
TU1192698 lncRNA upstream 886 19876954 ~ 19877271 (-) True G1046543
TU1192700 lncRNA upstream 2298 19878366 ~ 19879122 (-) True G1046545
TU1192709 lncRNA upstream 11235 19887303 ~ 19887637 (-) True G1046554
XM_021626098.2 mRNA downstream 128318 19746311 ~ 19747504 (-) True LOC110539128
XM_021622956.2 mRNA downstream 269738 19580903 ~ 19606084 (-) True LOC110537146
XM_021622954.2 mRNA downstream 269739 19580903 ~ 19606083 (-) False LOC110537146
XM_036937156.1 mRNA upstream 21260 19897328 ~ 19938577 (-) False LOC110536814
XM_036937157.1 mRNA upstream 21260 19897328 ~ 19938578 (-) False LOC110536814
XM_036937154.1 mRNA upstream 21260 19897328 ~ 19938583 (-) False LOC110536814
XM_036937155.1 mRNA upstream 21260 19897328 ~ 19938584 (-) False LOC110536814
XM_021622971.2 mRNA upstream 65438 19941506 ~ 19978680 (-) False LOC110537153
TU1192375 other downstream 317153 19556278 ~ 19558669 (-) True LOC110537144
TU1191233 other downstream 970716 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 1007763 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 1060428 18813902 ~ 18815394 (-) True G1045201
TU1190787 other downstream 1428571 18446681 ~ 18447251 (-) True LOC110537121
TU1192719 other upstream 37771 19913839 ~ 19938505 (-) True LOC110536814
TU1193559 other upstream 619497 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 633548 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 825472 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 986524 20862592 ~ 20866081 (-) True LOC110537162

Expression Profile