RNA id: TU1192696



Basic Information


Item Value
RNA id TU1192696
length 227
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G1046541
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19876252 ~ 19876478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAGTGTGGGGTGTGGGGCATGGGTTGGTGGTGCTGCAGGTGCCCATTCTGGTGGTGAGGCACTGAGGGGGTGAAGTTCCCATTTCTCGGCCAGCCTGAGGCGGCATCTGAAATCAGAACAATCACCAGTTGCATCAGACCATAAGCACAGATAGAAAATACCATGACCTAAAAATAACTCAATCACACTAAACACATACCTAATGAACTATAACAACGGCCTCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1192695 lncRNA downstream 184 19875822 ~ 19876068 (-) True G1046540
TU1192694 lncRNA downstream 1333 19874464 ~ 19874919 (-) True G1046539
TU1192693 lncRNA downstream 2453 19873441 ~ 19873799 (-) True G1046538
TU1192692 lncRNA downstream 3431 19872552 ~ 19872821 (-) True G1046537
TU1192599 lncRNA downstream 19804 19856188 ~ 19856448 (-) True G1046456
TU1192697 lncRNA upstream 70 19876548 ~ 19876784 (-) True G1046542
TU1192698 lncRNA upstream 476 19876954 ~ 19877271 (-) True G1046543
TU1192700 lncRNA upstream 1888 19878366 ~ 19879122 (-) True G1046545
TU1192709 lncRNA upstream 10825 19887303 ~ 19887637 (-) True G1046554
TU1192711 lncRNA upstream 12109 19888587 ~ 19888836 (-) True G1046556
XM_021626098.2 mRNA downstream 128748 19746311 ~ 19747504 (-) True LOC110539128
XM_021622956.2 mRNA downstream 270168 19580903 ~ 19606084 (-) True LOC110537146
XM_021622954.2 mRNA downstream 270169 19580903 ~ 19606083 (-) False LOC110537146
XM_036937156.1 mRNA upstream 20850 19897328 ~ 19938577 (-) False LOC110536814
XM_036937157.1 mRNA upstream 20850 19897328 ~ 19938578 (-) False LOC110536814
XM_036937154.1 mRNA upstream 20850 19897328 ~ 19938583 (-) False LOC110536814
XM_036937155.1 mRNA upstream 20850 19897328 ~ 19938584 (-) False LOC110536814
XM_021622971.2 mRNA upstream 65028 19941506 ~ 19978680 (-) False LOC110537153
TU1192375 other downstream 317583 19556278 ~ 19558669 (-) True LOC110537144
TU1191233 other downstream 971146 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 1008193 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 1060858 18813902 ~ 18815394 (-) True G1045201
TU1190787 other downstream 1429001 18446681 ~ 18447251 (-) True LOC110537121
TU1192719 other upstream 37361 19913839 ~ 19938505 (-) True LOC110536814
TU1193559 other upstream 619087 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 633138 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 825062 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 986114 20862592 ~ 20866081 (-) True LOC110537162

Expression Profile