RNA id: TU1192700


Basic Information

Item Value
RNA id TU1192700
length 757
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G1046545
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19878366 ~ 19879122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATTATTGGATACTGTGTAACCATCCCTAGGTACAACAGTCTAAAACTTAATGGATTTTAACCTGTTTTGAAACAATAAACCTTCCCAAGTAGTCAACTCTCAACTTTGTGACAACAATAAGAATAGAagtataataatattattattaataaataataataagtaCACAACCTCAATGGAATACATTAGAATAATACTGAAATAAAATCTGTCACCTTGATATAGGCGCTGGGGTAGATCTTGTGCACTGCGTCTCCAGGGGCCCGTCCTGCCTCCCTGTCCAAGTAATAACTCTGCACAAACACTGCATGATCACTAAGGCAACGCACCCACACGTCACCTTCCCCTTTACACTCCAGCTGCACCCCTTTACCAATGTGAAGTCTAAAgccaggaaggaaggaaagaagcaGATGGAGACAAACAGTAAAAGCCTTCACATTTTGCTAGTGTATTTTTCCAAAACTATGAATGATGTTCTGCTTAGTCATTTCATTTAGCAAAGACATTAAATCATTACTTGTTCTATAAATCTTTCCTTTTTCTATTTGATATGGTAGGTTCATGACTTTGGCCTGGGGtgggtttatgacagtcataaatacctcttccccactgatgtgacatttgaaaaccccttggttaacatagagattctgggaacatcagaaggtggggggaaatgaactagattctggtaatccgaccaattgaacatatgcggtggtacttaatgaatatgatgtcagttcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1192698 lncRNA downstream 1095 19876954 ~ 19877271 (-) True G1046543
TU1192697 lncRNA downstream 1582 19876548 ~ 19876784 (-) True G1046542
TU1192696 lncRNA downstream 1888 19876252 ~ 19876478 (-) True G1046541
TU1192695 lncRNA downstream 2298 19875822 ~ 19876068 (-) True G1046540
TU1192694 lncRNA downstream 3447 19874464 ~ 19874919 (-) True G1046539
TU1192709 lncRNA upstream 8181 19887303 ~ 19887637 (-) True G1046554
TU1192711 lncRNA upstream 9465 19888587 ~ 19888836 (-) True G1046556
TU1192713 lncRNA upstream 11158 19890280 ~ 19890515 (-) True G1046558
TU1192714 lncRNA upstream 11930 19891052 ~ 19891866 (-) True G1046559
TU1192715 lncRNA upstream 13575 19892697 ~ 19892936 (-) True G1046560
XM_021626098.2 mRNA downstream 130862 19746311 ~ 19747504 (-) True LOC110539128
XM_021622956.2 mRNA downstream 272282 19580903 ~ 19606084 (-) True LOC110537146
XM_021622954.2 mRNA downstream 272283 19580903 ~ 19606083 (-) False LOC110537146
XM_036937156.1 mRNA upstream 18206 19897328 ~ 19938577 (-) False LOC110536814
XM_036937157.1 mRNA upstream 18206 19897328 ~ 19938578 (-) False LOC110536814
XM_036937154.1 mRNA upstream 18206 19897328 ~ 19938583 (-) False LOC110536814
XM_036937155.1 mRNA upstream 18206 19897328 ~ 19938584 (-) False LOC110536814
XM_021622971.2 mRNA upstream 62384 19941506 ~ 19978680 (-) False LOC110537153
TU1192375 other downstream 319697 19556278 ~ 19558669 (-) True LOC110537144
TU1191233 other downstream 973260 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 1010307 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 1062972 18813902 ~ 18815394 (-) True G1045201
TU1190787 other downstream 1431115 18446681 ~ 18447251 (-) True LOC110537121
TU1192719 other upstream 34717 19913839 ~ 19938505 (-) True LOC110536814
TU1193559 other upstream 616443 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 630494 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 822418 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 983470 20862592 ~ 20866081 (-) True LOC110537162

Expression Profile