RNA id: TU1193252


Basic Information

Item Value
RNA id TU1193252
length 550
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1047041
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20062514 ~ 20086968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgctaactcagcggctaggaggtatcacttctgtagtgaataagagttcaaagttcataccattcgcaaccaaagctcacgctgatgttggcttcgttctgtagttattatctgaaccattctgacatcggaccgtcgtccccacatcctcggaacaggaggttatattgtcgtcaatgctttatataggaagggagaggagggcgtgtttgaaaagttttatagcccatgtcccttcacaggggcgggccactgattgagcagagccctaccttatgaaaacccaaatctcacattttagaagctaaaatcacatttcatcccatcacgaataatttcatattcaaacatttaaattgaacaacaattccatgtgaatccgataactctgatgtgtagactttccactgtagagtttgtagagtttatgtaatcttatcattgatgagaatgtctcagatgacaaccgaactgacatcatattcattaagtaccaccgcatatgttcaattgttcggattaccagaatatagttcatttcctcCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1192792 lncRNA downstream 51409 20010820 ~ 20011105 (-) True G1046630
TU1192777 lncRNA downstream 67931 19994356 ~ 19994583 (-) True G1046615
TU1192732 lncRNA downstream 151409 19910833 ~ 19911105 (-) True G1046574
TU1192716 lncRNA downstream 164675 19893417 ~ 19897839 (-) False LOC110536814
TU1192717 lncRNA downstream 165999 19893417 ~ 19896515 (-) False LOC110536814
TU1193390 lncRNA upstream 171893 20258861 ~ 20259396 (-) True G1047175
TU1193404 lncRNA upstream 283182 20370150 ~ 20373667 (-) True G1047188
TU1193517 lncRNA upstream 346683 20433651 ~ 20434637 (-) True G1047284
TU1193538 lncRNA upstream 377719 20464687 ~ 20464906 (-) True G1047305
TU1193541 lncRNA upstream 381740 20468708 ~ 20469590 (-) True G1047308
XM_021622971.2 mRNA downstream 83834 19941506 ~ 19978680 (-) False LOC110537153
XM_021622972.2 mRNA downstream 83834 19941506 ~ 19978680 (-) True LOC110537153
XM_036937155.1 mRNA downstream 123930 19897328 ~ 19938584 (-) False LOC110536814
XM_036937154.1 mRNA downstream 123931 19897328 ~ 19938583 (-) False LOC110536814
XM_036937157.1 mRNA downstream 123936 19897328 ~ 19938578 (-) False LOC110536814
XM_036937170.1 mRNA upstream 287367 20374335 ~ 20482280 (-) False LOC110536815
XM_036937172.1 mRNA upstream 287367 20374335 ~ 20482280 (-) False LOC110536815
XM_036937171.1 mRNA upstream 287367 20374335 ~ 20487546 (-) False LOC110536815
XM_036937169.1 mRNA upstream 287367 20374335 ~ 20487549 (-) True LOC110536815
XM_036937161.1 mRNA upstream 401155 20488123 ~ 20599476 (-) False LOC110537156
TU1192719 other downstream 124009 19913839 ~ 19938505 (-) True LOC110536814
TU1192375 other downstream 503845 19556278 ~ 19558669 (-) True LOC110537144
TU1191233 other downstream 1157408 18859862 ~ 18905106 (-) False LOC110537130
TU1191234 other downstream 1194455 18859862 ~ 18868059 (-) True LOC110537130
TU1191128 other downstream 1247120 18813902 ~ 18815394 (-) True G1045201
TU1193559 other upstream 408597 20495565 ~ 20496428 (-) True G1047325
TU1193449 other upstream 422648 20509616 ~ 20599427 (-) True LOC110537156
TU1193723 other upstream 614572 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 775624 20862592 ~ 20866081 (-) True LOC110537162
TU1193952 other upstream 846993 20933961 ~ 20936901 (-) True LOC110537166

Expression Profile