RNA id: TU1193657



Basic Information


Item Value
RNA id TU1193657
length 200
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G1047411
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20670650 ~ 20670849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTCTTCCATGGAAATCTCTTGCAGGCTGTGAGACTCCGACTGGAACTCTGGCTCTGGTTCCTCCACAGACGGGGACAGAGAATCACTATGCCAATCCGAGTAGTGAGCTCTTTTGGCAGGCTGAAGGTTTTGGTAAAGGGGGCGTGTGGAGACGGAGCTCAGGAGCAACAAACACGTGGCCAAAACATCCCATAACTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1193656 lncRNA downstream 1768 20667484 ~ 20668882 (-) True G1047410
TU1193629 lncRNA downstream 10044 20660390 ~ 20660606 (-) True G1047387
TU1193618 lncRNA downstream 21360 20648957 ~ 20649290 (-) True G1047376
TU1193610 lncRNA downstream 33249 20637143 ~ 20637401 (-) True G1047368
TU1193584 lncRNA downstream 108650 20561218 ~ 20562000 (-) True G1047344
TU1193658 lncRNA upstream 100 20670949 ~ 20671173 (-) True G1047412
TU1193660 lncRNA upstream 2707 20673556 ~ 20678518 (-) True G1047414
TU1193667 lncRNA upstream 18022 20688871 ~ 20689128 (-) True G1047419
TU1193669 lncRNA upstream 19627 20690476 ~ 20691901 (-) True G1047421
TU1193670 lncRNA upstream 21154 20692003 ~ 20694015 (-) True G1047422
XM_036939493.1 mRNA downstream 31969 20607973 ~ 20638681 (-) True LOC110537157
XM_036937164.1 mRNA downstream 71174 20488123 ~ 20599476 (-) False LOC110537156
XM_036937173.1 mRNA upstream 119006 20789855 ~ 20797910 (-) False LOC110537159
XR_005034904.1 mRNA upstream 119006 20789855 ~ 20797912 (-) False LOC110537159
XR_005034905.1 mRNA upstream 119006 20789855 ~ 20797912 (-) False LOC110537159
XR_005034906.1 mRNA upstream 119006 20789855 ~ 20797912 (-) False LOC110537159
XR_005034907.1 mRNA upstream 119006 20789855 ~ 20797912 (-) False LOC110537159
TU1193449 other downstream 71223 20509616 ~ 20599427 (-) True LOC110537156
TU1193559 other downstream 174222 20495565 ~ 20496428 (-) True G1047325
TU1192719 other downstream 732145 19913839 ~ 19938505 (-) True LOC110536814
TU1192375 other downstream 1111981 19556278 ~ 19558669 (-) True LOC110537144
TU1191234 other downstream 1802591 18859862 ~ 18868059 (-) True LOC110537130
TU1193723 other upstream 30691 20701540 ~ 20702040 (-) True G1047473
TU1193905 other upstream 191743 20862592 ~ 20866081 (-) True LOC110537162
TU1193952 other upstream 263112 20933961 ~ 20936901 (-) True LOC110537166
TU1195341 other upstream 1114342 21785191 ~ 21785557 (-) True G1048931
TU1195401 other upstream 1218689 21889538 ~ 21889869 (-) True G1048983

Expression Profile