RNA id: TU1194073



Basic Information


Item Value
RNA id TU1194073
length 353
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G1047776
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21006536 ~ 21006888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAATGCTCTGAGGCACTGTGAGGTCACCTGCAGCTAGCGGTGATGGTGACGCTTTGGGTGCAGCTGGTGGGAGTTGAACCACCGTTGAAGAGGCCGGAGATGGAGCAGGCCCAGGGGAATCAACAACGAGGCTGCCATCAGCAGCAAGCCAAACAGCCGAACAGGCGGATACCACCTGCCCCTGACGAAAGTAGTCGAGGCAAGATAAGATCACCTGAACCCTTCTGGTGGGCAGGtgtgctctcatgaggactgagtCCAGTTCCATACCAATGAAGGCCACTCTCTGGGTGGGCTTCAGATGACTCCTGATGTTTACAGTAATGCCCAGCCCACCGTTGTGGGTCAGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1194063 lncRNA upstream 7786 20998463 ~ 20998750 (+) True G1047766
TU1194060 lncRNA upstream 9540 20996722 ~ 20996996 (+) True G1047763
TU1194054 lncRNA upstream 14079 20992157 ~ 20992457 (+) True G1047757
TU1194041 lncRNA upstream 24615 20981435 ~ 20981921 (+) True G1047744
TU1193851 lncRNA upstream 72678 20932571 ~ 20933858 (+) True LOC110537167
TU1194102 lncRNA downstream 15372 21022260 ~ 21024124 (+) False G1047803
TU1194101 lncRNA downstream 16912 21023800 ~ 21024124 (+) True G1047803
TU1194117 lncRNA downstream 21856 21028744 ~ 21029015 (+) True G1047816
TU1194258 lncRNA downstream 116690 21123578 ~ 21123782 (+) True G1047952
TU1194382 lncRNA downstream 210625 21217513 ~ 21258288 (+) True G1048070
XM_021623005.2 mRNA upstream 42069 20961503 ~ 20964467 (+) True LOC110537168
XM_036937180.1 mRNA upstream 72670 20932536 ~ 20933866 (+) False LOC110537167
XM_021622992.2 mRNA upstream 93744 20891988 ~ 20912792 (+) True LOC110537163
XM_021622983.2 mRNA upstream 160274 20804025 ~ 20846262 (+) False LOC110537160
XM_021623008.2 mRNA downstream 282196 21289084 ~ 21298403 (+) True LOC110537171
XM_036937182.1 mRNA downstream 457659 21464547 ~ 21479892 (+) False LOC110537175
XM_021623011.2 mRNA downstream 457669 21464557 ~ 21481116 (+) True LOC110537175
LOC110536816 mRNA downstream 503601 21510489 ~ 21516816 (+) True LOC110536816
XM_021623018.2 mRNA downstream 591877 21598765 ~ 21626234 (+) False LOC110537179
TU1193645 other upstream 314794 20690827 ~ 20691742 (+) False LOC110537158
TU1193644 other upstream 315267 20690827 ~ 20691269 (+) False LOC110537158
TU1193125 other upstream 495017 20509269 ~ 20511519 (+) True G1046929
TU1193001 other upstream 712685 20282886 ~ 20293851 (+) True G1046823
TU1192894 other upstream 859122 20144179 ~ 20147414 (+) True G1046724
TU1194759 other downstream 826206 21833094 ~ 21834812 (+) True G1048417
TU1195985 other downstream 1519053 22525941 ~ 22526232 (+) True G1049502
TU1196129 other downstream 1722042 22728930 ~ 22737666 (+) True G1049629
TU1198209 other downstream 3170542 24177430 ~ 24177934 (+) True G1051534
TU1199317 other downstream 4345696 25352584 ~ 25356008 (+) False LOC110537258

Expression Profile