RNA id: TU1195342


Basic Information

Item Value
RNA id TU1195342
length 220
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1048932
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21786399 ~ 21786618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtgtaaagccataacatatacattttttcagctgcagactatgatcaataatgtcaaaagctgcactgaaatctaacaagacagcccccaatAATTTTataatcaatttctctcagccaatcatcagtcatttgtgtacgtgctgtgcttgttgagtgtccttccctataagcatgctgaaattctgttgtcattttttttttactgtgaaatagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1195320 lncRNA downstream 59002 21727190 ~ 21727397 (-) True G1048910
TU1195318 lncRNA downstream 65635 21720128 ~ 21720764 (-) True G1048908
TU1195316 lncRNA downstream 67317 21718835 ~ 21719082 (-) True G1048906
TU1195314 lncRNA downstream 70357 21715837 ~ 21716042 (-) True G1048904
TU1195313 lncRNA downstream 70614 21715390 ~ 21715785 (-) True G1048903
TU1195380 lncRNA upstream 33099 21819717 ~ 21821054 (-) True G1048965
TU1195293 lncRNA upstream 40904 21827522 ~ 21828763 (-) True G1048883
TU1195278 lncRNA upstream 42547 21829165 ~ 21831470 (-) False LOC110537198
TU1195291 lncRNA upstream 64178 21850796 ~ 21851261 (-) True LOC110537198
TU1195387 lncRNA upstream 78080 21864698 ~ 21868482 (-) True LOC110537200
XM_021623040.2 mRNA downstream 5951 21777869 ~ 21780448 (-) True LOC110537191
NM_001171861.2 mRNA downstream 17441 21766027 ~ 21768958 (-) True iscua
XR_005034912.1 mRNA downstream 50954 21729670 ~ 21735445 (-) True LOC118937645
LOC118937644 mRNA downstream 116932 21667423 ~ 21669467 (-) True LOC118937644
XM_021623023.2 mRNA downstream 131154 21645814 ~ 21655245 (-) False cry5
LOC110537196 mRNA upstream 18075 21804693 ~ 21805631 (-) True LOC110537196
XM_021623047.2 mRNA upstream 42540 21829158 ~ 21851620 (-) False LOC110537198
XM_021623048.2 mRNA upstream 42540 21829158 ~ 21852005 (-) False LOC110537198
XM_021623052.2 mRNA upstream 78080 21864698 ~ 21872628 (-) False LOC110537200
XM_021623060.2 mRNA upstream 110486 21897104 ~ 21899118 (-) False LOC110537204
TU1195341 other downstream 842 21785191 ~ 21785557 (-) True G1048931
TU1193952 other downstream 849498 20933961 ~ 20936901 (-) True LOC110537166
TU1193905 other downstream 920318 20862592 ~ 20866081 (-) True LOC110537162
TU1193723 other downstream 1084359 20701540 ~ 20702040 (-) True G1047473
TU1193449 other downstream 1186972 20509616 ~ 20599427 (-) True LOC110537156
TU1195401 other upstream 102920 21889538 ~ 21889869 (-) True G1048983
TU1195432 other upstream 144565 21931183 ~ 21931785 (-) True G1049013
TU1195415 other upstream 150713 21937331 ~ 21938200 (-) True G1048996
TU1195414 other upstream 151828 21938446 ~ 21942996 (-) True G1048995
TU1195524 other upstream 330444 22117062 ~ 22124904 (-) True G1049089

Expression Profile