RNA id: TU1196228


Basic Information

Item Value
RNA id TU1196228
length 299
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1049711
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22672764 ~ 22673062 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTATTGGAGAAAGTACACTTACTCAGAACAGTGCAGAAGATTGTGATGAGGTAAGATAACAGTGGTCTGATATAATTTACAGAGTTACCAAATTGAAATGTGCAGTTTGAATATCCACTTAAGGCTCATAAGCATTTAAAGCATGGTAGGCTTGTTTAGCCTAGACTCAATTCAATAAATGTAGTAAACTGTTCAAGTGTGCTTACTGTCTGCCATTGGTTTTGCTCCTCTCTCTAATGATAACTTTGTCCATGAAAATATTTTGATTCAGCACCCACTTTTTAATGTTTTTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1196181 lncRNA downstream 105854 22561152 ~ 22566910 (-) True G1049666
TU1196172 lncRNA downstream 119194 22553367 ~ 22553570 (-) True G1049658
TU1196170 lncRNA downstream 121562 22550926 ~ 22551202 (-) True G1049656
TU1196139 lncRNA downstream 132896 22539592 ~ 22539868 (-) True G1049637
TU1195993 lncRNA downstream 139510 22533019 ~ 22533254 (-) True G1049510
TU1196231 lncRNA upstream 2380 22675442 ~ 22676180 (-) True G1049713
TU1196241 lncRNA upstream 16694 22689756 ~ 22689994 (-) True G1049723
TU1196244 lncRNA upstream 27536 22700598 ~ 22700972 (-) True G1049726
TU1196271 lncRNA upstream 87090 22760152 ~ 22760393 (-) True G1049753
TU1196709 lncRNA upstream 147979 22821041 ~ 22821486 (-) True G1050155
LOC110537219 mRNA downstream 2086 22665662 ~ 22670678 (-) True LOC110537219
XM_036937230.1 mRNA downstream 7146 22663283 ~ 22665618 (-) True LOC118937647
LOC118937813 mRNA downstream 9784 22659615 ~ 22662980 (-) True LOC118937813
XM_036937229.1 mRNA downstream 18284 22607858 ~ 22654480 (-) False LOC110536820
XM_036937225.1 mRNA downstream 20750 22607858 ~ 22652014 (-) False LOC110536820
XM_021623093.2 mRNA upstream 20637 22693699 ~ 22714042 (-) False LOC110537220
XM_021623096.2 mRNA upstream 20637 22693699 ~ 22731678 (-) False LOC110537220
XM_036937232.1 mRNA upstream 20637 22693699 ~ 22737133 (-) False LOC110537220
XM_021623099.2 mRNA upstream 20637 22693699 ~ 22741303 (-) False LOC110537220
XM_021623098.2 mRNA upstream 20637 22693699 ~ 22744505 (-) False LOC110537220
TU1196151 other downstream 31165 22607861 ~ 22641599 (-) False LOC110536820
TU1196153 other downstream 31165 22607861 ~ 22641599 (-) True LOC110536820
TU1196162 other downstream 126107 22544178 ~ 22546657 (-) True LOC110537218
TU1195860 other downstream 332255 22337086 ~ 22340509 (-) True G1049389
TU1195524 other downstream 547860 22117062 ~ 22124904 (-) True G1049089
TU1196240 other upstream 16099 22689161 ~ 22689597 (-) True G1049722
TU1197008 other upstream 570575 23243637 ~ 23244270 (-) True G1050429
TU1198735 other upstream 1881635 24554697 ~ 24555000 (-) True G1052040
TU1198799 other upstream 1931218 24604280 ~ 24607820 (-) True LOC118936414
TU1201112 other upstream 2950817 25623879 ~ 25624637 (-) True G1054211

Expression Profile