RNA id: TU1196792


Basic Information

Item Value
RNA id TU1196792
length 1675
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1050227
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22991010 ~ 22992778 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgatgtggggatgtttttcatcggcagggactgggaaactggtcagacttgaaagaatgatggatggtgctaaatacagggacattcttgaaggaaacctgtttcagtcttccagagatttgagactgggacggaggttaaccttccagcaggacaatgaccctaagcatactgctaaagcaacactcgagtggtttaaaaCCTCTTGCAGctccccccctactttgtgcaattttccacctgaagacatacccaaatctaacagcctgtagctcaggcacagaaccaaggatatgcatattcttggtaccatttgaaagaaaacacgctgaagtttgtgtaaatgtgaattgaatgtaggagaataacacacaatagatctggtttagataaaacaatgaaaaaaacatatgttttttatttttgtatcatcatctttaaaatgaacaagataaaacaaacattcagataggatgatggggacaatttcagtgaaaactatacgagggcaacagtacttgtgcaaagtttcagaatgataacttccaaaatgagtgtgcttaCATGAcgtttatcatgaagtcacccaggtgtcccacacaagtagactaaatgtacccaagtggccaaattggtgaaggtatacattttgaaacaaataactatatacaaaataccaaaatggtattctaacaccccccccacacatttacaaaataacatgggtaactatttacacactttcaatatttggaagaccctcagtcctctatcaaatcaaatcaatttatatagccccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggaaaaaacataggaagaaacctagagaggaaccaggctatgaggggtggccagtcctcttctggctgtgccgggtggagatcacagtggttgtagagggtgcaacaggacagcacctcaagagtaaaaattaacagtttagggttccatagccgaaggcagaacagttgaaattggaacagcggcaaggccaggtggactgggaacagcaaggagtcatcatgccaggtagtcctagggctcaggtcctccgagagagagaaagagagaattagagagagcatacttaaattcacacaggacactggataagactcccattcggagtcagtgtcactgtgaaagaaaatgttcagttagaatagtttcacatatgagccctgtatcaacaggtataataaacagatatatatagagagttgaaggttgaaggttgaatatattaggttgaatatattattatattattattacctgctagatctactgtctcttttatattatgacatttcagctagatctactgtctctattatattatgacatttcagctagatctactgtctctattatattatgacatttcagctagatctactgtctcgattatattatgacatttcagctagatctactgtctttattatattacaacagaccagctgtatctactgtctccatttcactttggccattgatgtggtcctgccctctcctcaacagcctcaaataggctatttcatgtgggttggggtggggcggcagacacacgcatctcacatttcatgacattacatgtttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1196722 lncRNA downstream 161903 22828245 ~ 22829107 (-) False G1050165
TU1196725 lncRNA downstream 161903 22828245 ~ 22829107 (-) True G1050165
TU1196711 lncRNA downstream 168571 22822216 ~ 22822439 (-) True G1050157
TU1196710 lncRNA downstream 169292 22821516 ~ 22821718 (-) True G1050156
TU1196709 lncRNA downstream 169524 22821041 ~ 22821486 (-) True G1050155
TU1196907 lncRNA upstream 109894 23102672 ~ 23121201 (-) True G1050335
TU1196939 lncRNA upstream 152474 23145252 ~ 23163148 (-) True G1050364
TU1196961 lncRNA upstream 181630 23174408 ~ 23174772 (-) True G1050382
TU1196999 lncRNA upstream 238158 23230936 ~ 23231137 (-) True G1050420
TU1197005 lncRNA upstream 243030 23235808 ~ 23236033 (-) True G1050426
LOC110537227 mRNA downstream 109086 22879185 ~ 22881924 (-) True LOC110537227
XM_021623106.2 mRNA downstream 121042 22862262 ~ 22869968 (-) False LOC110537225
XM_021623107.2 mRNA downstream 121042 22862262 ~ 22869968 (-) True LOC110537225
XR_002475589.2 mRNA downstream 131377 22823888 ~ 22859633 (-) True LOC110537224
XM_021623104.2 mRNA downstream 131378 22823888 ~ 22859632 (-) False LOC110537224
XM_036939495.1 mRNA upstream 444940 23437718 ~ 23438711 (-) True LOC118937815
XM_036939497.1 mRNA upstream 460699 23453477 ~ 23454855 (-) True LOC118937816
XM_021622498.2 mRNA upstream 464805 23457583 ~ 23460327 (-) True LOC110536822
XM_021623113.2 mRNA upstream 726320 23719098 ~ 23867582 (-) False LOC110537230
XM_036937242.1 mRNA upstream 726320 23719098 ~ 23951743 (-) False LOC110537230
TU1196240 other downstream 301413 22689161 ~ 22689597 (-) True G1049722
TU1196151 other downstream 349411 22607861 ~ 22641599 (-) False LOC110536820
TU1196153 other downstream 349411 22607861 ~ 22641599 (-) True LOC110536820
TU1196162 other downstream 444353 22544178 ~ 22546657 (-) True LOC110537218
TU1195860 other downstream 650501 22337086 ~ 22340509 (-) True G1049389
TU1197008 other upstream 250859 23243637 ~ 23244270 (-) True G1050429
TU1198735 other upstream 1561919 24554697 ~ 24555000 (-) True G1052040
TU1198799 other upstream 1611502 24604280 ~ 24607820 (-) True LOC118936414
TU1201112 other upstream 2631101 25623879 ~ 25624637 (-) True G1054211
TU1201136 other upstream 2664491 25657269 ~ 25659005 (-) True G1054232

Expression Profile