RNA id: TU1196907


Basic Information

Item Value
RNA id TU1196907
length 1154
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1050335
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 23102672 ~ 23121201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttctttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagctcccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaatgttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttatttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttctgaaccattccattgtagattttgctttctgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaatttgaaccatcttccctgtccctgctgaagaaaagcagacccaagccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttaatctgaccagagcaccttcttccatatgtttggggtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggtcagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcattcttcttcttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactcatcccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtttccaaatccggctttaaacttcttcacaacagtatctcggacctacctggtgtgttccttgttcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1196792 lncRNA downstream 109894 22991010 ~ 22992778 (-) True G1050227
TU1196722 lncRNA downstream 273565 22828245 ~ 22829107 (-) False G1050165
TU1196725 lncRNA downstream 273565 22828245 ~ 22829107 (-) True G1050165
TU1196711 lncRNA downstream 280233 22822216 ~ 22822439 (-) True G1050157
TU1196710 lncRNA downstream 280954 22821516 ~ 22821718 (-) True G1050156
TU1196939 lncRNA upstream 24051 23145252 ~ 23163148 (-) True G1050364
TU1196961 lncRNA upstream 53207 23174408 ~ 23174772 (-) True G1050382
TU1196999 lncRNA upstream 109735 23230936 ~ 23231137 (-) True G1050420
TU1197005 lncRNA upstream 114607 23235808 ~ 23236033 (-) True G1050426
TU1197006 lncRNA upstream 116779 23237980 ~ 23238243 (-) True G1050427
LOC110537227 mRNA downstream 220748 22879185 ~ 22881924 (-) True LOC110537227
XM_021623106.2 mRNA downstream 232704 22862262 ~ 22869968 (-) False LOC110537225
XM_021623107.2 mRNA downstream 232704 22862262 ~ 22869968 (-) True LOC110537225
XR_002475589.2 mRNA downstream 243039 22823888 ~ 22859633 (-) True LOC110537224
XM_021623104.2 mRNA downstream 243040 22823888 ~ 22859632 (-) False LOC110537224
XM_036939495.1 mRNA upstream 316517 23437718 ~ 23438711 (-) True LOC118937815
XM_036939497.1 mRNA upstream 332276 23453477 ~ 23454855 (-) True LOC118937816
XM_021622498.2 mRNA upstream 336382 23457583 ~ 23460327 (-) True LOC110536822
XM_021623113.2 mRNA upstream 597897 23719098 ~ 23867582 (-) False LOC110537230
XM_036937242.1 mRNA upstream 597897 23719098 ~ 23951743 (-) False LOC110537230
TU1196240 other downstream 413075 22689161 ~ 22689597 (-) True G1049722
TU1196151 other downstream 461073 22607861 ~ 22641599 (-) False LOC110536820
TU1196153 other downstream 461073 22607861 ~ 22641599 (-) True LOC110536820
TU1196162 other downstream 556015 22544178 ~ 22546657 (-) True LOC110537218
TU1195860 other downstream 762163 22337086 ~ 22340509 (-) True G1049389
TU1197008 other upstream 122436 23243637 ~ 23244270 (-) True G1050429
TU1198735 other upstream 1433496 24554697 ~ 24555000 (-) True G1052040
TU1198799 other upstream 1483079 24604280 ~ 24607820 (-) True LOC118936414
TU1201112 other upstream 2502678 25623879 ~ 25624637 (-) True G1054211
TU1201136 other upstream 2536068 25657269 ~ 25659005 (-) True G1054232

Expression Profile