RNA id: TU1197086


Basic Information

Item Value
RNA id TU1197086
length 341
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1050504
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 23348123 ~ 23348463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgacatagggaagacagggccctggaagcctcctccccaaaaacagatcgatcaaaaacccgtatcatctcctccttaaagtcttgatactggttagtacactcagcccttgcctcccagattgccgtgccccactcacgagcccgtccaataaggagagatatgacgtaggcgacacgagcagtgctcctggagtaagtgttgggctggagagaaaacacaatatcacactgggtgaggaacgagcggcattcagtgggctccccagagtaacacggcgggttattgattccgGGCTCCgaagattcgaaagccctggaagtggccggtggatcgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1197085 lncRNA downstream 695 23346828 ~ 23347428 (-) True G1050503
TU1197084 lncRNA downstream 1644 23346260 ~ 23346479 (-) True G1050502
TU1197075 lncRNA downstream 14246 23333602 ~ 23333877 (-) True G1050493
TU1197058 lncRNA downstream 39533 23308283 ~ 23308590 (-) True G1050476
TU1197054 lncRNA downstream 46637 23301244 ~ 23301486 (-) True G1050472
TU1197087 lncRNA upstream 4184 23352647 ~ 23352859 (-) True G1050505
TU1197091 lncRNA upstream 9493 23357956 ~ 23358175 (-) True G1050509
TU1197095 lncRNA upstream 19481 23367944 ~ 23368153 (-) True G1050513
TU1197105 lncRNA upstream 24946 23373409 ~ 23373622 (-) True G1050523
TU1197114 lncRNA upstream 28483 23376946 ~ 23377220 (-) True G1050532
LOC110537227 mRNA downstream 466199 22879185 ~ 22881924 (-) True LOC110537227
XM_021623106.2 mRNA downstream 478155 22862262 ~ 22869968 (-) False LOC110537225
XM_021623107.2 mRNA downstream 478155 22862262 ~ 22869968 (-) True LOC110537225
XR_002475589.2 mRNA downstream 488490 22823888 ~ 22859633 (-) True LOC110537224
XM_021623104.2 mRNA downstream 488491 22823888 ~ 22859632 (-) False LOC110537224
XM_036939495.1 mRNA upstream 89255 23437718 ~ 23438711 (-) True LOC118937815
XM_036939497.1 mRNA upstream 105014 23453477 ~ 23454855 (-) True LOC118937816
XM_021622498.2 mRNA upstream 109120 23457583 ~ 23460327 (-) True LOC110536822
XM_021623113.2 mRNA upstream 370635 23719098 ~ 23867582 (-) False LOC110537230
XM_036937242.1 mRNA upstream 370635 23719098 ~ 23951743 (-) False LOC110537230
TU1197008 other downstream 103853 23243637 ~ 23244270 (-) True G1050429
TU1196240 other downstream 658526 22689161 ~ 22689597 (-) True G1049722
TU1196151 other downstream 706524 22607861 ~ 22641599 (-) False LOC110536820
TU1196153 other downstream 706524 22607861 ~ 22641599 (-) True LOC110536820
TU1196162 other downstream 801466 22544178 ~ 22546657 (-) True LOC110537218
TU1198735 other upstream 1206234 24554697 ~ 24555000 (-) True G1052040
TU1198799 other upstream 1255817 24604280 ~ 24607820 (-) True LOC118936414
TU1201112 other upstream 2275416 25623879 ~ 25624637 (-) True G1054211
TU1201136 other upstream 2308806 25657269 ~ 25659005 (-) True G1054232
TU1201977 other upstream 3632320 26980783 ~ 26982355 (-) True G1055010

Expression Profile