RNA id: TCONS_00041933


Basic Information

Item Value
RNA id TCONS_00041933
length 3053
lncRNA type inter_gene
GC content 0.60
exon number 13
gene id XLOC_020641
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 27146 ~ 36116 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAGACTGAAGATTAACCTAACACATGTTGTATTTTAGGATCACACGTAATTTCAAAACTGGATAGAAACTTTGCTATTGTTGCAGGTTCATAAGTGCTGTATTTACTCtgtaatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtaggcTGTGGTTGCGTCTCTGAAGGCTGAAGTGCAGGATTTGCGCAGTCAGCTGCAGGACGCCGCGGCTGCACACGGCCGAGAGCTGCGCAGACTGCAGGAGAACTGCGGAGACCAGCAGACGCGAGCCGACGCCGCACTCACAGAGTTGGAGGAGTGTCGCGCGCTCCTGTCATCCGTGGAGGAGAGCCGAGACGCCGCCAGACGAGAGCTGCTGGAGGCGGAGACACGTTTCTGCCAGATACGAGATGCAGGGGAGGGGCATAAACGAGAAGAGGCGGAGCTACGGCGCTCCCTCAGTGATGTCACCAAGGAGAGGGACGCtctcagccaatcaaacagccaGCTGAGGGAAGCCCTGAGAGCAGCAGAGACTGAGAGAATCAGTGTGAAGCGTGTGTGTGAGGAGCAGCAGCAGAAGCTGTGTGTGCTGGAGGAGTGTGTGTCGTCTGCGCAGACGGAGGTGTCGGAGCTGCGCAGCTGCCTGCGGGAGGTGGAGAATCCAGACTGGAGGCCCGTAGGGAGATGCAGGAGCTGCGCAgacagctgAAGGCTCTGGACAGTGAGTgtgtgcagcagcagcagcagtgcgGGGATCTCCAGgcgcgtgtgtgtgtggagcagcaGAAGCAGCAGCAGTGCAGTCGAGAGCTGATCACAGTAAAGCAGAAACTCGCAGACGCAGACACcgccacacacacactgcagaaagagcTGTCGCTCCTGCAGCGGCGTCTGGCCGAGAGCGAGGCGTGTTTGCGCAGTCGTGAGCGTGAGCTAGCGTCACAGCTACAGGAGGCTAGCGGCGCGCAGCAGAAGCTCCAGGACGAGGTGTGTAAGCTGAGCGTGCGCTCACAGACGGCTGCAGACGCGGCTGCACAGGTGCAGCTGGAGCTCAGTGCGGCACAGGGTCGACTGGCAGCCACGGAGGCGGAGCTTTCACGAGCGGAGGCGGGGCGTCGTGACCTGGAGTTCCGCCTTTCCAGTCTGCAGTCGACGCTCACTCGTACGCTAGGCATCGGCGCCAGTGGGCGGAGCAGCAGCAGAGGGCGGAGTCCCACAGGCTCCTCCCCTTCCTCTTTGACCTCAGGGATGATGTCTCGCCATCGGAGCGTGTCTCCGCTGCGCTGCTCACTATCGCCACCTAAAGATGTGGCCAATCACGTGTCTCCTGATAGCTCCATGATGCTGCGGCCGCTGTCTCCAGAGCGCAGTGATGCCCCGCTGCCCGTCGCCCTGCCCGACCTGGAGCCGCAGGAGCTGCGCAGCCGTCTGAGGGAGTTCCTGCTGGAGCTGCGGGAGGCACAGAGGGAACGGGACGAGGTGAGGGGTCAGCTGGGGTCACTGCAGGGGGAGTTACAGGAAGTGACAGGAGAGAGAGACTCCGCCCACGAGCGCCTCACTCAGCTGCACAACACACTGCAGGAATGCCAAgaggagaagCGTGCAGCGGATGCTAAGCTGTCGTCGGCTGAAGCGCAGCTGCAGGAGCGTGACGAGTGTATGCGGAGAGCAGAGCGGGAGCGGCGAGCGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAACACTGCCGTATGATTGTAGCTGCTATGCTAATGTTAGCACATGTCGCCCCCTGCAGGAGCAGTGCAGTCAGCTGCGCGCGGGAGAGGCGCGGCTGGAGGCGGAGCGGCGGCGGCTGTGGGAGGCGCTGGAGGCTGCAGAGGGGCGGGGCACACGGGTGGAGCTGGGGAGGAGGAGTCTAGAGGGAGAGCTGCAGCGAATCAGACGGAGTCTGGCTGAGAAGGAGGCGGAGATTCAGACGGCACACCAGAAACTCGACAGCGCCACCAAACAGgtgTCGGAGGCGGAGCTGCGCGTCTCCTGTCTGCAGCGGGAGCAGGAGCGTCTGACTCTGCAGCTGTCGAAAGCTCAGGATGGGGAGCGTCTGCTGCAGGAGCGAgtgctgtctctctctcacaGCCTGCAGGAGGCCACAGACGCTCACAGCGCCACCCACAGCCGTCTCACTGCACTGCAGAAGAGCCTGAGCCAGGCGGAGGGAGAGCGCAGACAGCTGCaggagcGTGTAGATGCACTCAGAGCCTCTGCTGCAGACGGGAAGCGCAGTACAGACTCCCTCACTGAGCGCGTGCAGACGCTGCAGACGGAGCTGAAGCAGAGCCAGCAGAGCAGAGCAGATCTGGAGACGcagctgcacagcacacagcAGGCTCTGCGTGTGCGCTCCGAGACTCTGGCCGCGGCTCAGCTCGGTCTCCAGGCTGCGCAGATAGACAGGTCGGCTGCTGAGGAGCGTCTGCGCAGTCTTCAGAGAGCTGTCGCCCTGCTGGAGACCGAGAAGAGGGATGCAGAGAGACAGGCTGTGAGGATGGAGAAAGACAGGGCGGCACTCAGGAGCACACTGGacaagGTGGAGCGTCAGAAGCTGCAGACGGAGGAGAGCAGTGTTCGTCTGAGTGTGGAGAAGAGTCGCCTGGACCGATCACTCAACAGCACAGAGCAGGAGCTGCaggacgcacacacacagatcacactgctgcagGCTCAGCTGGTGGAGATGGAGCAGAGTCACTGCGGCTGCGAGCACCAGAGCCGTCAGCAGGAGGAGGCGGAGCGGGAGGCGGAGCGACTGCGGGTCAGCCAGAGAGAGGCGGAGCGCACGCTAGCGGCCCGCGAGAGAGCACACCGGCAGCGGGTCAGAGGTCTGGAGGAGCAGCTCAACACCCTGAAGGAGCAGCTGCAGCAGGAGATCCGGAGGAGGAGTCCGGCACTGCCCCCTGCGCTCAGCTGA

Function

GO:

id name namespace
GO:0140053 mitochondrial gene expression biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0071439 clathrin complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042226 lncRNA upstream 64966 101082 ~ 101447 (-) True XLOC_020646
TCONS_00041934 lncRNA upstream 96656 132772 ~ 134339 (-) True XLOC_020647
TCONS_00040846 lncRNA upstream 124461 160577 ~ 161002 (-) True XLOC_020648
TCONS_00042227 lncRNA upstream 277594 313710 ~ 315374 (-) False XLOC_020657
TCONS_00042228 lncRNA upstream 277594 313710 ~ 315380 (-) True XLOC_020657
TCONS_00040838 mRNA downstream 16320 9165 ~ 10826 (-) True XLOC_020640
TCONS_00040837 mRNA downstream 20096 5156 ~ 7050 (-) True XLOC_020639
TCONS_00040839 mRNA upstream 8249 44365 ~ 50878 (-) True XLOC_020642
TCONS_00040840 mRNA upstream 20528 56644 ~ 57177 (-) True XLOC_020643
TCONS_00040841 mRNA upstream 40353 76469 ~ 80533 (-) True XLOC_020644
TCONS_00040842 mRNA upstream 49481 85597 ~ 94352 (-) False XLOC_020645
TCONS_00040843 mRNA upstream 53873 89989 ~ 94519 (-) True XLOC_020645
TCONS_00040857 other upstream 308802 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 776804 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 1121953 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 1193790 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3559152 3595268 ~ 3680725 (-) True XLOC_020748

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000186_00630683_00632213.mRNA True 1166 mRNA 0.62 5 CI01000186 630683 ~ 632227 (+)