RNA id: TCONS_00040842


Basic Information

Item Value
RNA id TCONS_00040842
length 5356
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_020645
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 85597 ~ 94519 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGTGCGGCGGAAGTGGAAACCGGGGGTGCGTCGCACTAACCCGTCCGTGTGCGCTGATCAGCATGGCGGCGGTACGGCATCTGTGCCAGCGGACAGCGATCAGACTGCGGCTCACCTGCAGCCCACAGAGCCGaGTGTGTGTGGTGCGCGGACACAGACTCGGCCCTTTTGATGACGAGCAGTACCGGAAGACCTCCGTGTCCATCATGCAGAAGGAAGCTTCAGCCGGAACCGTCATCTACAGCTACAGCCCTCGAGGATTCAACATCAACGGAAACACAGTGTTTGGGCCGTGTGCTGTCCTGCCGCCCGCCATCCTGCAGTGGAACgtgggcAGTCACTCAGATATCTCGGTGGAGAGTCTGTCTCTGTTTTACCTGCTGGAGCCGCAGATCGagGTGCTGGTGTTGGGCACCGGGGCCCGCACAGAGCGACTGCATGCAGAAGTGCTGGAGGAGCTGAAGAAGAGAGGCATCGCTGTGGAGGTTCAAGACacgCCCAACGCCTGTGCAACTTTCAACTTCCTGTCCAGCGAGAAGCGTCTGGCGGCGGCTGCTCTGATCCCGCCCCCGGCTGGCAGCAGGTGAAGCAGAGCATCATGGGAGATGAAGTCACCtcacgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagggaataaacagattgtgtgtgtgtgcgctaatCTGTTAATCCGTCTCTCTGTCCTCTGTGATAGTGGGTTAATCTGAGCTCatgtctgaacacacacacacacacacacacacacagaggatcaGATTGACTGGAGCTGCTGATCTGTTTATATGATGCCGTGTCCGTCTGTACGCTCCTCATCACACACAGCAGACAGACGTGTGTTCAGATGTGCTGTAGAACAGGATGTGTGATCAATAAATGATGACAGGTCTCCCCGCGCCGTCTCACTGAGCTTTTATTAATGTTAGCATGTATTATTATCCAGCATTCACACATCCTCACACATGCCCACCTGCTGATCAGTGCCGTCAGTACATGTGCACCATCTCAACACtaggctctgtgtgtgtgtgtgtgtgagtgactaGAGTTTTAGTACAGCTTACCCATCACACTGTGTAGCAAACACAAACGACTGTATCACTTAATCAATTATTGAACAGGTAGAGGTGTGTGAGAAGTGTGTTTACGCCGCCGCCGGCGAGAGCAGCATTCGCCCTGACCGGTTTAAGGATTTCTAGAGAAATAAACCAACTGAAGTGTTCGCATTTAAGTGCGAGTCTGAggccgtacacacacacacacacacacacacacacacacacacacaccggggTATTTTATAAACAGGTTTCTTCACTCTTCATGTTAAAACACTTCTGTCCACATGAACAGGGCTGTGATGCATGTTAGGAGCACGCCGAGCCAGCAGGGGGCGATAACCAGTGTGCGAAATACACATTGACGATCAGGGCGGTCAACTTTCTCGGTAATGTTAGGGATCGTGTAATAACCGCTTCAGTGAGTCTAATTTATTGATAAACTTTATTTACGCTGTCGTGTTTGTGGGAGCGGCTGTTCAGAGTATTCCTGATGCACTATTTTCTGCTTACTATAGTCACTGTTCACACTACACATCTAAATAGACTTTAGGCCTGATGTGGAAACAGCTGTTGAATGAGGAAACACAGCTCGTCTGAATCTGCTGGcggattatgcattcacaatggtatgaaccgctATGGGGGGGTGGGCTGGGGGtcaaatatatattcattcattcattttccttcggctcagtcgaTTCatgaatctggggtcgccacagtggaatgaaccacctacttatctagcatatgtttgtGTAACCCatcactagggccagacggaatctgcggatgttttttgctatttctgcagagaattttggtaaaaatctgcggatttctgctgaattattttgggagtatcaaaactaaaaccttaacatatgaaacaaaaagtaataaattactgaataaaaactgaatgaatttagatttacacatttactcaagtaaattaacagaattaatgatgggcgaaaaatctgcggatttctgtgcgcgcagattcgtTGTGGGCCTACCCAACacagaaacattcacacacacactcatacactagtgccagtgtagttgatcagttcccctatagcgcatgtgtttggactgtgggggaaaccggagcacccggaggaaacccacaccaacacggggagaacatgcaaactccacacagaaacaccaactgattcggctgggactcgaaccagagaccttcttgctgtgaggtgtttgagctacccactgcgccaccgtgccgccccaaaCAAGTCATGAATCATTAATCATGGTTTGACAGTAATGGAGGAACGCCGCCGGTGGTAGAGGAGTGAGAGTAAGCGTTCCTCTCCAATCATTTACTGGAGTAAGAGTCTGTGAATGTACTCTGAAAGTAGCACTACTCAACTCTTTTACTCCAGTAAATGTAATTGGTTACCCGCCTCTGCTGTACCGGACCTACAGTAACTCTGAGATCTCAGAATGTTTGGGTTTCAGTCTCCTGATACTGCGTTTACTGAAGACGAACAGTGGAACCGCGTAGAAAAGAGTGCGGTGTTGAGAACAGCCCTGATCGTGTGGACAGAGCCTGAGCTCAACACGCTGCTCACTGGAGTCGTCTTGGTCTTGGTCTAGACTTTGTGCACATCCTACATTACAGAAAGGGGAAGCCAGCACAGCGATAACCAGCCTCCGCTTGTGTGTTTGGGATCTGATGTGGTCGGGTCAGTATAATGGATGTTCTCTGGAATCTTCTCAAGCGCTGGCTTCCtacactctgattggctgattctcAAACTGCCCAAATCACACCAGTTCTGAAAGAGATGAACGACTTTCGGCTAATTTTGGGCCCGTGCTGGCGGCGGTGTGAACACGGGTACTGTAGACATGAGAGATCCTGAGGATGAAGACGGTGTTCAGTGAGGGACGAGTGAGATTAATGACCCGGGAGTGTCCGCCAGTGTGGACTGAAGCAGAACTCCGGGTCAGCAGTGCACAGAAACACTGACCCCTGACCCAGAACTGATCATCCCTCATCCCTGTGTTGACTGATCTGATCTGGGTTGTGCAGGTTGTGTGGTGTTAGCATCACTCATCGGAGTCCGCGTCTGCATCCCGCGGGTCCCGGCAGCTGAACTCTGACCCTGTGATGCGGCGGTACAGGTCCATGATGTCCTCGGTGTCCGTCTGGAGGTGTGTGGAGGGGTCGTAGGAGCGCGAGATGAAGATCTGCAGGAAGACATACCAGCAATGCTACGTGACATCAGTGCTAAGGCCCGTTCACAGCAAACACGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacagaggagcgCTAACGACTTAAGCACTGGTGATGTTACCTGGCTCCTGCGGCCGTCGTCCGCGGGGACCATCAGGTTACTGACTGACAAGAACCTGCGGACAGAGAGAGCGTCAGTGATTGGCCAGTACCCATAATGCACTGCTCAGGTGTGGGACTCACTTCTCCAGGATGGGCTCCAGCAGTGCCAGCCCCGCCTGCACCTCCTTCTCTGGGTTACCAGTCTCCACCATAGTGCTGACGCAGGCGATGTACTTCCCTTCAGACGCCACATTATGAGTGTAGGACACCAGACACACGTACACatctgcacgcacacacacacacacacacacacacacacagttacagCACTCGAGCGTCCCCTACACTGCAGAAACGCTTGTCTGATTACAGTAATGCAGTCAGGTGTCTGCTAAAGTGGGCCGGTCTGAGGTGTAGATCTGACCTGACTTGCGGTTGAGCTGCGCCTGCGGGATGATGATCTGGCAGGAGTTGGCCTCATGGGTGTTTTTGATGGGGTGGTTGAGCAGGCACAGCACCCGCACCACCCGGCCCACCTTCTTGACCCGCTCCGGCAGGTAACTGGGGTCAGAGATGAGCTGCTTACAGCGGAAGACCTGCAGGAGTACACAGAGCGTCAGACCGGCTCGTGACCTGCTGACGAAGGAGCGTTCAGTGTCTAGTGCGGTAAAGCTTGTCCATGCTGTGATGAGCTCTCGTTAGCCTACACTAATGTTACCTGTGTGTCCTATCTCTCAGCACTGCTTCAGCTCCCTATTGAACATCGGATACATGCTCAAACCTCACTGACTCCCTGCAGAGCCCTGGACAGCTGAGCTCCAGTACTTGAGGAGCTGCTGGAGTATTGAAGCCCCTCATGCTCACTACGCTCATCTCATCCTGGATTAATAGATTATTCCTAGAAACACACTTCCCAACAAGACAGCGTGACGTGAACGGCATCTCCGCTTATGGTAGTCGGTTTCTCCTCCTCCGGTCTCCATAGTCCTGGACCCgcctgtatcctgagcagattcCTCGCTGCTGGTCTGCTTGGTTAGTGTGTCTGCATcgctggatttgctcttcagtgtttgggcttCCAGCAGTGACGCTTACTGATCTGAACTGAActctggactgaagcagtttcagcCGGTTTACTAGACCTTATCTGTGTTCAGCTGCTGTGACTCAGTCTACACTGTAGAAGCGCTGAAGAAAAACAGAGGAACTGTAGAGAGTGTTTCTGCTCACCTCTCCCTCCGACCGCACTGCCGCCACCCGCCCGCCCTCCAGCACCACCTCCTCCACCCGTCTGTTCAGCAGGAAGCTGTTCCCGTAGACAGCACTGAGcctgcggacacacacacaccttttacatcacacactgacacacactgacCCACACTGACCCCTGCCTGATGCACACTGACGAACACTGGCCCCACATCTGACACACTTGCAAACACTGACCCCACATCTCTGACCCACACTGACCCCACATCTGACCCCAGTCTGACCCACACTGACCCCAGTCTGACccacactgacacacactgacTCCACATCTGACCCACACTGACCCCAGTCTGACCCCAGTCTGACccacactgacacacactgacCCCACATCTGACCCACACTGACCCCATGCCTGACCCACACTGACCCCAGTCTGACAC

Function

GO:

id name namespace
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04714 Thermogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070112-282 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in membrane; mitochondrion; and nucleus. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 18. Orthologous to human NDUFAF3 (NADH:ubiquinone oxidoreductase complex assembly factor 3).

Ensembl:

ensembl_id ENSDART00000184883

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041933 lncRNA downstream 49481 27146 ~ 36116 (-) True XLOC_020641
TCONS_00042226 lncRNA upstream 6730 101082 ~ 101447 (-) True XLOC_020646
TCONS_00041934 lncRNA upstream 38420 132772 ~ 134339 (-) True XLOC_020647
TCONS_00040846 lncRNA upstream 66225 160577 ~ 161002 (-) True XLOC_020648
TCONS_00042227 lncRNA upstream 219358 313710 ~ 315374 (-) False XLOC_020657
TCONS_00042228 lncRNA upstream 219358 313710 ~ 315380 (-) True XLOC_020657
TCONS_00040841 mRNA downstream 5064 76469 ~ 80533 (-) True XLOC_020644
TCONS_00040840 mRNA downstream 28420 56644 ~ 57177 (-) True XLOC_020643
TCONS_00040839 mRNA downstream 34719 44365 ~ 50878 (-) True XLOC_020642
TCONS_00040838 mRNA downstream 74771 9165 ~ 10826 (-) True XLOC_020640
TCONS_00040837 mRNA downstream 78547 5156 ~ 7050 (-) True XLOC_020639
TCONS_00040844 mRNA upstream 36615 130967 ~ 155627 (-) False XLOC_020647
TCONS_00040845 mRNA upstream 63760 158112 ~ 164944 (-) False XLOC_020648
TCONS_00040847 mRNA upstream 90318 184670 ~ 188112 (-) True XLOC_020649
TCONS_00040848 mRNA upstream 97579 191931 ~ 193234 (-) True XLOC_020650
TCONS_00040849 mRNA upstream 114292 208644 ~ 209741 (-) True XLOC_020651
TCONS_00040857 other upstream 250566 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040885 other upstream 718568 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040895 other upstream 1063717 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040899 other upstream 1135554 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040924 other upstream 3500916 3595268 ~ 3680725 (-) True XLOC_020748

Expression Profile

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